htSample: Example ChIP-sequencing data with 2 replicates per group...
In htSeqTools: Quality Control, Visualization and Processing for High-Throughput Sequencing data
Description
Usage
Format
Details
Examples
Description
This GRangesList contains a subset of drosophila
melanogaster ChIP-sequencing data
obtained with the Illumina sequencer.
An immuno-precipitated and a control input sample were obtained at two
experimental dates (details not provided as this is still unpublished data).
In order to save space and let the examples run quicker,
only reads mapping to the first 500kb of chr2L are included.
Usage
1
Format
GRangesList where each element contains reads from a
different sample.
names(htSample) indicate the group and batch (experimental
date) that each sample corresponds to.
Details
Data was pre-processed using the Illumina pipeline and mapped to the
drosophila melanogaster dm3 genome using Bowtie.
Only uniquely mapping sequences with at most 2 mismatches in the first
28 bases were kept.
See the package vignette for some more details on this dataset.
Examples
1
2
htSeqTools documentation built on May 6, 2019, 3:39 a.m.
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Description Usage Format Details Examples
Description
This GRangesList contains a subset of drosophila
melanogaster ChIP-sequencing data
obtained with the Illumina sequencer.
An immuno-precipitated and a control input sample were obtained at two
experimental dates (details not provided as this is still unpublished data).
In order to save space and let the examples run quicker,
only reads mapping to the first 500kb of chr2L are included.
Usage
1 |
Format
GRangesList where each element contains reads from a
different sample.
names(htSample) indicate the group and batch (experimental
date) that each sample corresponds to.
Details
Data was pre-processed using the Illumina pipeline and mapped to the drosophila melanogaster dm3 genome using Bowtie. Only uniquely mapping sequences with at most 2 mismatches in the first 28 bases were kept. See the package vignette for some more details on this dataset.
Examples
1 2 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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