| PeakLocation |
Man page
|
| PeakLocation,GRanges-method |
Man page
|
| PeakLocation,RangedData-method |
Man page
|
| PeakLocation,data.frame-method |
Man page
|
| PeakLocation-methods |
Man page
|
| [,gridCover,ANY,ANY,ANY-method |
Man page
|
| alignPeaks |
Man page
|
| alignPeaks,GRanges,character-method |
Man page
|
| alignPeaks,GRangesList,ANY-method |
Man page
|
| alignPeaks,GRangesList-method |
Man page
|
| alignPeaks,IRangesList,list-method |
Man page
|
| alignPeaks,RangedData,character-method |
Man page
|
| alignPeaks,list,character-method |
Man page
|
| alignPeaks-methods |
Man page
|
| cmds |
Man page
|
| cmds,CompressedGRangesList-method |
Man page
|
| cmds,GRangesList-method |
Man page
|
| cmds,list-method |
Man page
|
| cmds-methods |
Man page
|
| cmdsFit |
Man page
|
| cmdsFit,matrix-method |
Man page
|
| cmdsFit-class |
Man page
|
| cmdsFit-methods |
Man page
|
| countHitsWindow |
Man page
|
| countHitsWindow,GRanges-method |
Man page
|
| countHitsWindow,RangedData-method |
Man page
|
| countHitsWindow-methods |
Man page
|
| coverageDiff |
Man page
|
| enrichedChrRegions |
Man page
|
| enrichedChrRegions,GRanges,GRanges-method |
Man page
|
| enrichedChrRegions,GRanges,missing-method |
Man page
|
| enrichedChrRegions,RangedData,RangedData-method |
Man page
|
| enrichedChrRegions,RangedData,missing-method |
Man page
|
| enrichedChrRegions-methods |
Man page
|
| enrichedPeaks |
Man page
|
| enrichedPeaks,GRanges,GRanges,GRanges-method |
Man page
|
| enrichedPeaks,GRanges,GRanges,missing-method |
Man page
|
| enrichedPeaks,GRanges,missing,missing-method |
Man page
|
| enrichedPeaks,RangedData,IRanges,IRanges-method |
Man page
|
| enrichedPeaks,RangedData,IRanges,missing-method |
Man page
|
| enrichedPeaks,RangedData,IRangesList,IRangesList-method |
Man page
|
| enrichedPeaks,RangedData,IRangesList,missing-method |
Man page
|
| enrichedPeaks,RangedData,RangedData,RangedData-method |
Man page
|
| enrichedPeaks,RangedData,RangedData,missing-method |
Man page
|
| enrichedPeaks-methods |
Man page
|
| enrichedRegions |
Man page
|
| enrichedRegions,GRanges,GRanges,missing,ANY,ANY-method |
Man page
|
| enrichedRegions,GRanges,missing,missing,ANY,ANY-method |
Man page
|
| enrichedRegions,GRangesList,missing,missing,ANY,ANY-method |
Man page
|
| enrichedRegions,RangedData,RangedData,missing,ANY,ANY-method |
Man page
|
| enrichedRegions,RangedData,missing,missing,ANY,ANY-method |
Man page
|
| enrichedRegions,list,missing,missing,ANY,ANY-method |
Man page
|
| enrichedRegions,missing,missing,GRanges,ANY,ANY-method |
Man page
|
| enrichedRegions,missing,missing,RangedData,ANY,missing-method |
Man page
|
| enrichedRegions,missing,missing,RangedData,ANY,numeric-method |
Man page
|
| enrichedRegions-methods |
Man page
|
| extendRanges |
Man page
|
| extendRanges,GRanges-method |
Man page
|
| extendRanges,GRangesList-method |
Man page
|
| extendRanges,RangedData-method |
Man page
|
| extendRanges,list-method |
Man page
|
| extendRanges-methods |
Man page
|
| fdrEnrichedCounts |
Man page
|
| filterDuplReads |
Man page
|
| filterDuplReads,GRanges-method |
Man page
|
| filterDuplReads,GRangesList-method |
Man page
|
| filterDuplReads,RangedData-method |
Man page
|
| filterDuplReads,list-method |
Man page
|
| filterDuplReads-methods |
Man page
|
| findPeakHeight |
Man page
|
| findPeakHeight,GRanges,GRanges,GRanges-method |
Man page
|
| findPeakHeight,RangedData,IRangesList,IRangesList-method |
Man page
|
| findPeakHeight,RangedData,RangedData,RangedData-method |
Man page
|
| findPeakHeight,RangedData,Rle,Rle-method |
Man page
|
| findPeakHeight-methods |
Man page
|
| getCover |
Man page
|
| getCover,gridCover-method |
Man page
|
| getViewsInfo |
Man page
|
| getViewsInfo,gridCover-method |
Man page
|
| giniCoverage |
Man page
|
| giniCoverage,GRanges,ANY,ANY,ANY,character,integer-method |
Man page
|
| giniCoverage,GRanges,ANY,ANY,ANY,character,missing-method |
Man page
|
| giniCoverage,GRanges,ANY,ANY,ANY,missing,integer-method |
Man page
|
| giniCoverage,GRanges,ANY,ANY,ANY,missing,missing-method |
Man page
|
| giniCoverage,GRangesList,ANY,ANY,ANY,character,integer-method |
Man page
|
| giniCoverage,GRangesList,ANY,ANY,ANY,character,missing-method |
Man page
|
| giniCoverage,GRangesList,ANY,ANY,ANY,missing,integer-method |
Man page
|
| giniCoverage,GRangesList,ANY,ANY,ANY,missing,missing-method |
Man page
|
| giniCoverage,RangedData,ANY,ANY,ANY,character,integer-method |
Man page
|
| giniCoverage,RangedData,ANY,ANY,ANY,character,missing-method |
Man page
|
| giniCoverage,RangedData,ANY,ANY,ANY,missing,integer-method |
Man page
|
| giniCoverage,RangedData,ANY,ANY,ANY,missing,missing-method |
Man page
|
| giniCoverage,list,ANY,ANY,ANY,character,integer-method |
Man page
|
| giniCoverage,list,ANY,ANY,ANY,character,missing-method |
Man page
|
| giniCoverage,list,ANY,ANY,ANY,missing,integer-method |
Man page
|
| giniCoverage,list,ANY,ANY,ANY,missing,missing-method |
Man page
|
| giniCoverage-methods |
Man page
|
| gridCover-class |
Man page
|
| gridCoverage |
Man page
|
| htSample |
Man page
|
| islandCounts |
Man page
|
| islandCounts,GRanges-method |
Man page
|
| islandCounts,GRangesList-method |
Man page
|
| islandCounts,RangedData-method |
Man page
|
| islandCounts,list-method |
Man page
|
| islandCounts-methods |
Man page
|
| lines,gridCover-method |
Man page
|
| listOverlap |
Man page
|
| listOverlap,character,character,character,character-method |
Man page
|
| listOverlap,character,character,missing,character-method |
Man page
|
| listOverlap,factor,character,missing,missing-method |
Man page
|
| listOverlap-methods |
Man page
|
| mergeRegions |
Man page
|
| mergeRegions,GRanges-method |
Man page
|
| mergeRegions,IRanges-method |
Man page
|
| mergeRegions,RangedData-method |
Man page
|
| mergeRegions,RleViews-method |
Man page
|
| mergeRegions,data.frame-method |
Man page
|
| mergeRegions,matrix-method |
Man page
|
| mergeRegions-methods |
Man page
|
| plot,cmdsFit,ANY-method |
Man page
|
| plot,cmdsFit-method |
Man page
|
| plot,gridCover,ANY-method |
Man page
|
| plot,gridCover-method |
Man page
|
| plotChrRegions |
Man page
|
| plotMeanCoverage |
Man page
|
| plotMeanCoverage,RleList,RangedData-method |
Man page
|
| plotMeanCoverage-methods |
Man page
|
| plotminHeight |
Man page
|
| regionsCoverage |
Man page
|
| regionsCoverage,ANY,ANY,ANY,RleList-method |
Man page
|
| regionsCoverage-methods |
Man page
|
| rowLogRegLRT |
Man page
|
| show,gridCover-method |
Man page
|
| ssdCoverage |
Man page
|
| ssdCoverage,GRanges-method |
Man page
|
| ssdCoverage,GRangesList-method |
Man page
|
| ssdCoverage,IRangesList-method |
Man page
|
| ssdCoverage,RangedData-method |
Man page
|
| ssdCoverage,list-method |
Man page
|
| ssdCoverage-methods |
Man page
|
| stdGrid |
Man page
|
| stdGrid,gridCover-method |
Man page
|
| stdGrid-methods |
Man page
|
| stdPeakLocation |
Man page
|
| stdPeakLocation,GRanges-method |
Man page
|
| stdPeakLocation,RangedData-method |
Man page
|
| stdPeakLocation,data.frame-method |
Man page
|
| stdPeakLocation-methods |
Man page
|
| tabDuplReads |
Man page
|
| tabDuplReads,GRanges-method |
Man page
|
| tabDuplReads,GRangesList-method |
Man page
|
| tabDuplReads,RangedData-method |
Man page
|
| tabDuplReads,list-method |
Man page
|
| tabDuplReads-methods |
Man page
|
