Files in htSeqTools

Quality Control, Visualization and Processing for High-Throughput Sequencing data

inst/doc/htSeqTools.R inst/doc/htSeqTools.pdf R/enrichedRegions.R R/countRepeats.R R/extendRanges.R R/enrichedPeaks.R R/rowLogRegLRT.R R/ClassDefinitions.R R/enrichedChrRegions.R R/giniCoverage.R R/regionsCoverage.R R/stdPeakLocation.R R/ssdCoverage.R R/cmdsFit-class.R R/plotMeanCoverage.R R/tabDuplReads.R R/filterDuplReads.R R/gridCover-methods.R R/findPeakHeight.R R/alignPeaks.R R/GenericDefs.R R/listOverlap.R R/islandCounts.R R/fdrEnrichedCounts.R R/mergeRegions.R R/plotChrRegions.R R/coverageDiff.R R/cmds.R man/findPeakHeight.Rd man/giniCoverage.Rd man/enrichedRegions.Rd man/htSample.Rd man/rowLogRegLRT.Rd man/stdPeakLocation.Rd man/countHitsWindow.Rd man/regionsCoverage.Rd man/alignPeaks.Rd man/fdrEnrichedCounts.Rd man/mergeRegions.Rd man/extendRanges.Rd man/cmdsFit.Rd man/plot-methods.Rd man/ssdCoverage.Rd man/islandCounts.Rd man/plotChrRegions.Rd man/enrichedPeaks.Rd man/listOverlap.Rd man/cmdsFit-class.Rd man/gridCover-class.Rd man/cmds.Rd man/enrichedChrRegions.Rd man/filterDuplReads.Rd man/coverageDiff.Rd