QC Pipeline and Data Analysis Tools for High-Dimensional Illumina mRNA Expression Data

Global functions | |
---|---|

LumiBatch2Table | Man page Source code |

R2PlotFunc | Man page Source code |

addfDat | Source code |

boxPlots | Man page Source code |

checkCovariate | Source code |

densityPlots | Man page Source code |

extractIDs | Source code |

extractIDs3 | Source code |

extractSamples | Source code |

genExprSet | Man page Source code |

genSimData.BayesNormal | Man page Source code |

getCovInterest | Source code |

getDatColnames | Source code |

getDesignMat.glm | Source code |

getPCAFunc | Man page Source code |

glmFitOneProbe | Source code |

glmWrapper | Man page Source code |

inputChecking | Source code |

lkhrFitOneProbe | Source code |

lkhrWrapper | Man page Source code |

lmFitPaired | Man page Source code |

lmFitWrapper | Man page Source code |

logit | Source code |

mergeDuplicates | Source code |

myCombine | Source code |

myCombineIntersect | Source code |

myCombineUnion | Source code |

myShow | Source code |

outputFunc | Source code |

outputFunc2 | Source code |

pca2DPlot | Man page Source code |

pca3DPlot | Man page Source code |

plotCurves | Man page Source code |

plotQCCurves | Man page Source code |

plotSamplep95p05 | Man page Source code |

quantilePlot | Man page Source code |

readData | Source code |

readData.default | Source code |

readbgx | Source code |

readbgx2 | Source code |

scatterPlots | Man page Source code |

separateGCnonGC | Source code |

sortExpressionSet | Man page Source code |

upperTriangle | Source code |

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