Man pages for iCheck
QC Pipeline and Data Analysis Tools for High-Dimensional Illumina mRNA Expression Data
| boxPlots | Draw parallel plots for top results in whole-genome-wide... |
| densityPlots | Draw estimated density plots for all arrays |
| genExprSet | Generate an ExpressionSet object |
| genSimData.BayesNormal | Generating simulated data set from conditional normal... |
| getPCAFunc | Get principal components of arrays |
| glmWrapper | Perform glm test for all gene probes |
| lkhrWrapper | Perform glm test for all gene probes |
| lmFitPaired | A wrapper function for the function 'lmFit' of the R... |
| lmFitWrapper | A wrapper function for the function 'lmFit' of the R... |
| LumiBatch2Table | Output slots (exprs, pData, fData) of an LumiBatch object... |
| pca2DPlot | Scatter plot of first 2 principal components |
| pca3DPlot | Scatter plot of 3 specified principal components |
| plotCurves | Plot trajectories of probe profiles across arrays |
| plotQCCurves | Plot trajectories of specific QC probes (e.g., biotin,... |
| plotSamplep95p05 | Plot trajectories of the ratio of 95th percentile to 5th... |
| quantilePlot | Plot trajectories of quantiles across arrays |
| R2PlotFunc | Draw heatmap of square of correlations among arrays |
| scatterPlots | Draw scatter plots for top results in whole-genome-wide... |
| sortExpressionSet | Sort the order of samples for an ExpressionSet object |
