Description Usage Arguments Value References See Also Examples
Get list of all available dataset identifiers that satisfy all specified constraints (see Arguments).
1 |
... |
Optional arguments can be passed to the function for more specific requests:
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A list of dataset identifiers.
[1] MN. McCall, BM. Bolstad, and RA. Irizarry, Frozen Robust Multi-Array Analysis (fRMA), Biostatistics, vol. 11, no. 2, pp. 242-253 , 2008.
[2] SR. Piccolo, Y. Sun, JD. Campbell, ME. Lenburg, AH. Bild, and WE. Johnson, A single-sample microarray normalization method to facilitate personalized-medicine workflows, Genomics, vol. 100, no. 6, pp. 337-344, 2012.
Use getDatasetPlatformList
for the same functionality with a list of (dataset, platform) tuples as result.
1 2 3 4 5 6 7 8 9 10 11 12 | length(getDatasetList());
## 7167
length(getDatasetList(platform = "GPL570"));
## 2717
length(getDatasetList(platform = "GPL570", norm = "FRMA"));
## 2406
length(getDatasetList(platform = "GPL570", norm = "FRMA",
query = "Thyroid Cancer"));
## 5
getDatasetList(platform = "GPL570", norm = "FRMA",
query = "Thyroid Cancer");
## [1] "GSE6004" "GSE7307" "GSE32161" "GSE29265" "GSE2109"
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