Description Usage Arguments Value References Examples
Get the datasets for every platform for the given dataset identifier.
1 | getDatasets(dataset, ...);
|
dataset |
Valid dataset identifier: the GEO or InSilico DB accession code. |
... |
Optional arguments can be passed to the function for more specific requests:
|
A list with a Bioconductors ExpressionSet for every platform.
[1] MN. McCall, BM. Bolstad, and RA. Irizarry, Frozen Robust Multi-Array Analysis (fRMA), Biostatistics, vol. 11, no. 2, pp. 242-253 , 2008.
[2] SR. Piccolo, Y. Sun, JD. Campbell, ME. Lenburg, AH. Bild, and WE. Johnson, A single-sample microarray normalization method to facilitate personalized-medicine workflows, Genomics, vol. 100, no. 6, pp. 337-344, 2012.
1 2 3 4 5 6 7 8 | InSilicoLogin("rpackage_tester@insilicodb.com", "5c4d0b231e5cba4a0bc54783b385cc9a");
dataset.id <- "GSE1456"
getPlatforms(dataset.id);
## [1] "GPL96" "GPL97"
esets <- getDatasets(dataset.id, norm = "ORIGINAL");
sapply(esets, annotation)
## GPL96 GPL97
## "hgu133a" "hgu133b"
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