Description Usage Arguments Value References See Also Examples
Get list of all available dataset and platform tuples that satisfy all specified constraints (see Arguments).
1 |
... |
Optional arguments can be passed to the function for more specific requests:
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A list of dataset and platform tuples.
[1] MN. McCall, BM. Bolstad, and RA. Irizarry, Frozen Robust Multi-Array Analysis (fRMA), Biostatistics, vol. 11, no. 2, pp. 242-253 , 2008.
[2] SR. Piccolo, Y. Sun, JD. Campbell, ME. Lenburg, AH. Bild, and WE. Johnson, A single-sample microarray normalization method to facilitate personalized-medicine workflows, Genomics, vol. 100, no. 6, pp. 337-344, 2012.
Use getDatasetList
for the same functionality with a list of dataset identifiers as result.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 | length(getDatasetPlatformList());
## 7167
length(getDatasetPlatformList(platform = "GPL570"));
## 2717
length(getDatasetPlatformList(platform = "GPL570", norm = "FRMA"));
## 2406
length(getDatasetPlatformList(platform = "GPL570", norm = "FRMA",
query = "Thyroid Cancer"));
## 5
getDatasetPlatformList(platform = "GPL570", norm = "FRMA",
query = "Thyroid Cancer");
## [[1]]
## [1] "GSE6004" "GPL570"
##
## [[2]]
## [1] "GSE7307" "GPL570"
##
## [[3]]
## [1] "GSE32161" "GPL570"
##
## [[4]]
## [1] "GSE29265" "GPL570"
##
## [[5]]
## [1] "GSE2109" "GPL570"
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