API for karyoploteR
Plot customizable linear genomes displaying arbitrary data
| Global functions | |
|---|---|
| .getCytobands | Source code |
| .onLoad | Source code |
| addGeneNames | Man page Source code |
| addStrandMarks | Source code |
| autotrack | Man page Source code |
| colByCategory | Man page Source code |
| colByChr | Man page Source code |
| colByRegion | Man page Source code |
| colByValue | Man page Source code |
| darker | Man page Source code |
| filterParams | Man page Source code |
| findIntersections | Man page Source code |
| genomic2plot_2HorizDataAboveAndBelowIdeogram | Source code |
| genomic2plot_3HorizAllChromosomesInOneLine | Source code |
| getChrHeight_2HorizDataAboveAndBelowIdeogram | Source code |
| getChrHeight_3HorizAllChromosomesInOneLine | Source code |
| getChromosomeNamesBoundingBox | Man page Source code |
| getColorSchemas | Man page Source code |
| getCoordChangeFunctions | Source code |
| getCytobandColors | Man page Source code |
| getCytobands | Man page |
| getDataPanelBoundingBox | Man page Source code |
| getDefaultPlotParams | Man page Source code |
| getGeneNames | Source code |
| getIdeogramMidY_2HorizDataAboveAndBelowIdeogram | Source code |
| getIdeogramMidY_3HorizAllChromosomesInOneLine | Source code |
| getMainTitleBoundingBox | Man page Source code |
| getTextSize | Man page Source code |
| getTranscriptNames | Source code |
| getVariantsColors | Man page Source code |
| horizonColors | Man page Source code |
| is.color | Man page Source code |
| isValidData | Source code |
| kpAbline | Man page Source code |
| kpAddBaseNumbers | Man page Source code |
| kpAddChromosomeNames | Man page Source code |
| kpAddChromosomeSeparators | Man page Source code |
| kpAddColorRect | Man page Source code |
| kpAddCytobandLabels | Man page Source code |
| kpAddCytobands | Man page Source code |
| kpAddCytobandsAsLine | Man page Source code |
| kpAddLabels | Man page Source code |
| kpAddMainTitle | Man page Source code |
| kpArea | Man page Source code |
| kpArrows | Man page Source code |
| kpAxis | Man page Source code |
| kpBars | Man page Source code |
| kpDataBackground | Man page Source code |
| kpHeatmap | Man page Source code |
| kpLines | Man page Source code |
| kpPlotBAMCoverage | Man page Source code |
| kpPlotBAMDensity | Man page Source code |
| kpPlotBigWig | Man page Source code |
| kpPlotCoverage | Man page Source code |
| kpPlotDensity | Man page Source code |
| kpPlotGenes | Man page Source code |
| kpPlotHorizon | Man page Source code |
| kpPlotLinks | Man page Source code |
| kpPlotLoess | Man page Source code |
| kpPlotManhattan | Man page Source code |
| kpPlotMarkers | Man page Source code |
| kpPlotNames | Man page Source code |
| kpPlotRainfall | Man page Source code |
| kpPlotRegions | Man page Source code |
| kpPlotRibbon | Man page Source code |
| kpPlotTranscripts | Man page Source code |
| kpPoints | Man page Source code |
| kpPolygon | Man page Source code |
| kpRect | Man page Source code |
| kpSegments | Man page Source code |
| kpText | Man page Source code |
| lighter | Man page Source code |
| makeGenesDataFromTxDb | Man page Source code |
| mergeTranscripts | Man page Source code |
| naToEmptyChar | Source code |
| plotDefaultPlotParams | Man page Source code |
| plotKaryotype | Man page Source code |
| plotPalettes | Man page Source code |
| prepareParameters2 | Man page Source code |
| prepareParameters4 | Man page Source code |
| preprocessColors | Source code |
| preprocess_r0_r1 | Source code |
| processClipping | Man page Source code |
| recycle | Source code |
| recycle.first | Source code |
| shiftl | Source code |
| transparent | Man page Source code |
