Files in karyoploteR

Plot customizable linear genomes displaying arbitrary data

README.md R/kpBars.R R/kpPoints.R R/kpAddCytobands.R R/getCytobands.R R/kpPlotNames.R R/prepareParameters4.R R/kpPolygon.R R/kpText.R R/kpDataBackground.R R/getChromosomeNamesBoundingBox.R R/kpPlotHorizon.R R/kpPlotBAMDensity.R R/kpPlotTranscripts.R R/kpAxis.R R/utils.R R/getDataPanelBoundingBox.R R/kpPlotDensity.R R/kpAddChromosomeSeparators.R R/kpPlotCoverage.R R/kpPlotBAMCoverage.R R/kpRect.R R/kpArea.R R/kpAbline.R R/getCytobandColors.R R/kpPlotLinks.R R/kpAddColorRect.R R/kpPlotRainfall.R R/genes.R R/getChromosomeColors.R R/plotDefaultPlotParams.R R/kpAddLabels.R R/kpSegments.R R/kpLines.R R/prepareParameters2.R R/kpPlotManhattan.R R/kpAddCytobandsAsLine.R R/kpPlot2Lines.R R/text.R R/kpPlotGenes.R R/kpAddCytobandLabels.R R/zzz.R R/kpHeatmap.R R/kpPlotRibbon.R R/kpPlotRegions.R R/kpAddChromosomeNames.R R/getDefaultPlotParams.R R/kpAddMainTitle.R R/getCoordChangeFunctions.R R/plotKaryotype.R R/getMainTitleBoundingBox.R R/kpPlotLoess.R R/color.R R/kpPlotBigWig.R R/getVariantsColors.R R/kpAddBaseNumbers.R R/kpArrows.R R/kpPlotMarkers.R vignettes/karyoploteR.Rmd man/kpPolygon.Rd man/getTextSize.Rd man/kpArrows.Rd man/plotKaryotype.Rd man/is.color.Rd man/kpRect.Rd man/mergeTranscripts.Rd man/kpPlotDensity.Rd man/kpPlotNames.Rd man/findIntersections.Rd man/kpAddCytobands.Rd man/transparent.Rd man/addGeneNames.Rd man/kpSegments.Rd man/kpPlotRibbon.Rd man/kpAddColorRect.Rd man/kpAddChromosomeSeparators.Rd man/horizonColors.Rd man/kpPlotBigWig.Rd man/kpAddMainTitle.Rd man/getCytobandColors.Rd man/plotPalettes.Rd man/processClipping.Rd man/getDataPanelBoundingBox.Rd man/prepareParameters4.Rd man/kpAddCytobandsAsLine.Rd man/colByRegion.Rd man/kpArea.Rd man/kpAxis.Rd man/kpHeatmap.Rd man/colByCategory.Rd man/kpAddChromosomeNames.Rd man/kpPlotRegions.Rd man/kpPlotBAMDensity.Rd man/kpAddLabels.Rd man/kpPlotBAMCoverage.Rd man/getCytobands.Rd man/kpPlotHorizon.Rd man/getChromosomeNamesBoundingBox.Rd man/lighter.Rd man/kpPlotLinks.Rd man/getColorSchemas.Rd man/kpAbline.Rd man/kpLines.Rd man/kpPlotLoess.Rd man/getDefaultPlotParams.Rd man/colByChr.Rd man/darker.Rd man/prepareParameters2.Rd man/makeGenesDataFromTxDb.Rd man/getMainTitleBoundingBox.Rd man/kpDataBackground.Rd man/plotDefaultPlotParams.Rd man/kpPoints.Rd man/kpText.Rd man/colByValue.Rd man/autotrack.Rd man/getVariantsColors.Rd man/kpBars.Rd man/kpPlotManhattan.Rd man/kpPlotCoverage.Rd man/kpPlotTranscripts.Rd man/kpPlotGenes.Rd man/filterParams.Rd man/kpAddBaseNumbers.Rd man/kpPlotRainfall.Rd man/kpAddCytobandLabels.Rd man/kpPlotMarkers.Rd tests/testthat.R tests/testthat/test_Cytobands.R tests/testthat/test_prepareParameters.R tests/testthat/test_dataInDataCache.R tests/testthat/test_colors.R tests/testthat/test_plotKaryotype.R tests/testthat/test_utils.R inst/doc/karyoploteR.R inst/doc/karyoploteR.Rmd