Files in limmaGUI
GUI for limma Package With Two Color Microarrays
NAMESPACE
DESCRIPTION
build/vignette.rds
R/GetBC.R
R/main.R
R/normalize.R
R/PlotOptions.R
R/showGAL.R
R/utility.R
R/import.R
R/plot.R
R/htmlReport.R
R/imageAnalysisFormat.R
R/zzz.R
R/lmFitMethod.R
vignettes/extract.Rnw.txt
vignettes/limmaGUI.Rnw
vignettes/extract.Rnw
man/LGchangelog.Rd
man/limmaGUI.Rd
inst/CITATION
inst/doc/index.html
inst/doc/about.html
inst/doc/InputFiles.html
inst/doc/limmaGUI.R
inst/doc/extract.pdf
inst/doc/import.html
inst/doc/LinModIntro.pdf
inst/doc/changelog.txt
inst/doc/limmaGUI.pdf
inst/doc/windowsFocus.html
inst/doc/CustMenu.html
inst/doc/limmaGUI.Rnw
inst/doc/style.css
inst/doc/lgDevel.html
inst/doc/extract.Rnw
inst/doc/ApoAI/SpotsIncludedInLinearModel.jpg
inst/doc/ApoAI/MainWindowApoAILimmaFileLoaded.jpg
inst/doc/ApoAI/index.html
inst/doc/ApoAI/LogOddsPlot.jpg
inst/doc/ApoAI/Toptable.jpg
inst/doc/ApoAI/NormalizeWithinArrays.jpg
inst/doc/ApoAI/ParametersDropDowns.jpg
inst/doc/ApoAI/limmaGUImainWindow.jpg
inst/doc/ApoAI/PlotBoxPlotBySlide.jpg
inst/doc/ApoAI/ChooseNormalizationMethod.jpg
inst/doc/ApoAI/NumberDuplicates.jpg
inst/doc/ApoAI/OpenSelected.jpg
inst/doc/ApoAI/NormalizeBetweenArraysNo.jpg
inst/doc/ApoAI/AvgMAPlotFittedMValues.jpg
inst/doc/ApoAI/DEGeneLabelsOptions.jpg
inst/doc/ApoAI/OpeningLimmaFile.jpg
inst/doc/ApoAI/ContrastsDropDowns.jpg
inst/doc/ApoAI/ApoAILinearModelComputed.jpg
inst/doc/ApoAI/ToptableContrast.jpg
inst/doc/ApoAI/ApoAITargets.jpg
inst/doc/ApoAI/MBoxPlotSelected.jpg
inst/doc/ApoAI/LogOddsPlotSelected.jpg
inst/doc/ApoAI/ApoAIScaleBoxPlot.jpg
inst/doc/ApoAI/ChooseParameterOrContrast.jpg
inst/doc/ApoAI/SavingApoAILimmaFile.jpg
inst/doc/ApoAI/ContrastsParameterizationName.jpg
inst/doc/ApoAI/ChooseParameter.jpg
inst/doc/ApoAI/ParameterizationName.jpg
inst/doc/ApoAI/NumDEGeneLabels.jpg
inst/doc/ApoAI/ComputeContrastsSelected.jpg
inst/doc/ApoAI/ChooseParameterization.jpg
inst/doc/ApoAI/ContrastsComputed.jpg
inst/doc/ApoAI/ToptableSelected.jpg
inst/doc/ApoAI/ToptableOptions.jpg
inst/doc/ApoAI/SaveAsSelected.jpg
inst/doc/ApoAI/ComputeLinearModelFitSelected.jpg
inst/doc/ApoAI/CreateNewParameterization.jpg
inst/doc/about_files/SwirlToptable.jpg
inst/doc/about_files/wehilogo.gif
inst/doc/about_files/Mutant11vsMutant21ScatterPlot.jpg
inst/doc/about_files/BioinfBanner.jpg
inst/doc/about_files/WeaverMtMMPlotSelected.jpg
inst/doc/input/ImaGeneTargetsFile.png
inst/doc/input/ScorecardsTargetsInExcel.png
inst/doc/input/ScorecardSpotTypesInExcel.png
inst/doc/input/SwirlSampleInExcel.png
inst/doc/input/ApoAITargetsInExcel.png
inst/doc/input/ApoAISpotTypesInExcel.png
inst/doc/Swirl/SwirlChooseParameterization.jpg
inst/doc/Swirl/SwirlLinearModelComputed.jpg
inst/doc/Swirl/NumDuplicatesDialog.jpg
inst/doc/Swirl/SpotsIncludedInLinearModel.jpg
inst/doc/Swirl/OpenTargetsFileDialog.jpg
inst/doc/Swirl/Slide81Selected.jpg
inst/doc/Swirl/PrintTipGroupMAPlotSelectedFromMenu.jpg
inst/doc/Swirl/index.html
inst/doc/Swirl/SwirlLimmaFileNameInTitleBar.jpg
inst/doc/Swirl/LogOddsPlot.jpg
inst/doc/Swirl/ViewExistingParameterizationSelected.jpg
inst/doc/Swirl/OpeningFishGAL.jpg
inst/doc/Swirl/QQTplotSelected.jpg
inst/doc/Swirl/HTMLreportComponentsDialog.jpg
inst/doc/Swirl/SwirlParameterizationName.jpg
inst/doc/Swirl/MAPlotFittedMValuesSelected.jpg
inst/doc/Swirl/NormalizeWithinArrays.jpg
inst/doc/Swirl/SavingSwirlLimmaFile.jpg
inst/doc/Swirl/ImageProcessingFileType.jpg
inst/doc/Swirl/FileSaveAsSelected.jpg
inst/doc/Swirl/OpeningWeaverLimmaFile.jpg
inst/doc/Swirl/SelectingParameterForSwirlLinearModel.jpg
inst/doc/Swirl/DataSetNameSwirl.jpg
inst/doc/Swirl/EvaluateRCodeSelected.jpg
inst/doc/Swirl/limmaGUImainWindowSwirlArraysLoaded.jpg
inst/doc/Swirl/PlotPointSymbolsAndColors.jpg
inst/doc/Swirl/GALTargetsandSpotTypesFilesSelected.jpg
inst/doc/Swirl/limmaGUImainWindow.jpg
inst/doc/Swirl/PlotBoxPlotBySlide.jpg
inst/doc/Swirl/PlotLabelsDialog.jpg
inst/doc/Swirl/ChooseNormalizationMethod.jpg
inst/doc/Swirl/ShowColorCodedSpotTypesNo.jpg
inst/doc/Swirl/PrintTipGroupMAScatterPlotsSlide93.jpg
inst/doc/Swirl/MBoxPlotByPrintTipGroup.jpg
inst/doc/Swirl/NormalizeBetweenArraysNo.jpg
inst/doc/Swirl/SwirlRNATargets.jpg
inst/doc/Swirl/DEGeneLabelsOptions.jpg
inst/doc/Swirl/MAColorCodedScatterPlotSwirlSlide93.jpg
inst/doc/Swirl/MAScatterSlide81.jpg
inst/doc/Swirl/SwirlDesignMatrix.jpg
inst/doc/Swirl/ChooseParameterizationDialog.jpg
inst/doc/Swirl/ChooseSwirlWorkingDir.jpg
inst/doc/Swirl/SpotTypesTable.jpg
inst/doc/Swirl/UseBackgroundCorrection.jpg
inst/doc/Swirl/SwirlTargets.jpg
inst/doc/Swirl/QQTplot.jpg
inst/doc/Swirl/ImageArrayPlotEnterExpression.jpg
inst/doc/Swirl/SwirlTopTable.jpg
inst/doc/Swirl/SwirlSpotTypes.jpg
inst/doc/Swirl/ExportHTMLReportSelected.jpg
inst/doc/Swirl/SwirlQQTplot.jpg
inst/doc/Swirl/LogOddsPlotSelected.jpg
inst/doc/Swirl/Slide93Chosen.jpg
inst/doc/Swirl/LayoutParameters.jpg
inst/doc/Swirl/MAColorCodedScatterPlotSwirlFileClose.jpg
inst/doc/Swirl/ChooseParameter.jpg
inst/doc/Swirl/SwirlParameterizationAsPairs.jpg
inst/doc/Swirl/ScaleBoxPlot.jpg
inst/doc/Swirl/SpotQualityWeighting.jpg
inst/doc/Swirl/ImageArrayPlotSlide81.jpg
inst/doc/Swirl/EvalRCodeGALexample.jpg
inst/doc/Swirl/limmaGUINewFileSelected.jpg
inst/doc/Swirl/PNGImageParametersForHTML.jpg
inst/doc/Swirl/galEvalRCodeResults.jpg
inst/doc/Swirl/ImageArrayPlotSelected.jpg
inst/doc/Swirl/SwirlGAL.jpg
inst/doc/Swirl/SwirlColorCodedMAPlotSelectedFromPlotMenu.jpg
inst/doc/Swirl/NormalizeBetweenArraysYes.jpg
inst/doc/Swirl/PlotByPrintTipGroup.jpg
inst/doc/Swirl/ShowTextResults.jpg
inst/doc/Swirl/MBoxPlotSelectedFromMenu.jpg
inst/doc/Swirl/SavingSwirlHTML.jpg
inst/doc/Swirl/OpenGALandTargetsandSpotTypesFiles.jpg
inst/doc/Swirl/ToptableSelected.jpg
inst/doc/Swirl/mainWindowAfterLinModFit.jpg
inst/doc/Swirl/PlotTitleForImageArrayPlot.jpg
inst/doc/Swirl/ToptableOptions.jpg
inst/doc/Swirl/MAPlotFittedMValues.jpg
inst/doc/Swirl/SaveAsSelected.jpg
inst/doc/Swirl/ComputeLinearModelFitSelected.jpg
inst/doc/Swirl/CreateNewParameterization.jpg
inst/doc/Swirl/SwirlGetParameter.jpg
inst/doc/Swirl/SwirlLayout.jpg
inst/doc/Swirl/SaveLimmaFileDialog.jpg
inst/doc/Weaver/NumDuplicatesDialog.jpg
inst/doc/Weaver/SpotsIncludedInLinearModel.jpg
inst/doc/Weaver/DesignIALoaded.jpg
inst/doc/Weaver/index.html
inst/doc/Weaver/RcodeForHeatDiagram.jpg
inst/doc/Weaver/ShowGraphicalResultsOnly.jpg
inst/doc/Weaver/NormalizeWithinArrays.jpg
inst/doc/Weaver/OpeningWeaverLimmaFile.jpg
inst/doc/Weaver/HeatDiagram.jpg
inst/doc/Weaver/IAcreated.jpg
inst/doc/Weaver/OpenSelected.jpg
inst/doc/Weaver/PlotScaling.jpg
inst/doc/Weaver/NormalizeBetweenArraysNo.jpg
inst/doc/Weaver/IAParameterizationName.jpg
inst/doc/Weaver/ToptableSelectedIA.jpg
inst/doc/Weaver/DesignMatrixMt.jpg
inst/doc/Weaver/SpotTypesForLinearModel.jpg
inst/doc/Weaver/EvaluateSelected.jpg
inst/doc/Weaver/ParameterizationNameMt.jpg
inst/doc/Weaver/Mutant11Selected.jpg
inst/doc/Weaver/MtLinearModelComputed.jpg
inst/doc/Weaver/DropDownsAdvancedSelected.jpg
inst/doc/Weaver/Mutant21Selected.jpg
inst/doc/Weaver/WeaverTargets.jpg
inst/doc/Weaver/MMPlotCutOffValueDialog.jpg
inst/doc/Weaver/ChooseParameterIA.jpg
inst/doc/Weaver/WeaverScaleBoxPlot.jpg
inst/doc/Weaver/CreateNewParameterizationNo.jpg
inst/doc/Weaver/WeaverIASaveAs.jpg
inst/doc/Weaver/ChooseParameterizationMt.jpg
inst/doc/Weaver/DesignMatrixDialog.jpg
inst/doc/Weaver/SavingWeaverIALimma.jpg
inst/doc/Weaver/MMPlotSelected.jpg
inst/doc/Weaver/ChooseParameterizationIA.jpg
inst/doc/Weaver/MMplotMutant11Mutant21.jpg
inst/doc/Weaver/OpeningDesignIA.jpg
inst/doc/Weaver/CreateNewParameterizationSelected.jpg
inst/doc/Weaver/IAtoptable.jpg
inst/doc/import/chooseDir.png
inst/doc/import/DataSetName.png
inst/doc/import/ImportFilesSelected.png
inst/doc/import/WhetherNormalized.png
inst/doc/import/OpeningMFile.png
inst/doc/import/ImportMADialog.png
inst/doc/import/importSelected.png
inst/doc/Bob/SpotsIncludedInLinearModel.jpg
inst/doc/Bob/RNATargets.jpg
inst/doc/Bob/index.html
inst/doc/Bob/DupCorBoxPlot.jpg
inst/doc/Bob/LogOddsPlot.jpg
inst/doc/Bob/Toptable.jpg
inst/doc/Bob/NormalizeWithinArrays.jpg
inst/doc/Bob/ParameterDropDowns.jpg
inst/doc/Bob/DupCorMB.jpg
inst/doc/Bob/ChooseNormalizationMethod.jpg
inst/doc/Bob/NumberDuplicates.jpg
inst/doc/Bob/OpenSelected.jpg
inst/doc/Bob/NormalizeBetweenArraysNo.jpg
inst/doc/Bob/BobLimmaLoaded.jpg
inst/doc/Bob/SavingBobLinearModelComputed.jpg
inst/doc/Bob/DupCorBoxPlotSelected.jpg
inst/doc/Bob/ZeroDEgeneLabels.jpg
inst/doc/Bob/LogOddsPlotSelected.jpg
inst/doc/Bob/ChooseParameter.jpg
inst/doc/Bob/layout.jpg
inst/doc/Bob/ParameterizationName.jpg
inst/doc/Bob/CreateNewParameterizationNo.jpg
inst/doc/Bob/ChooseParameterization.jpg
inst/doc/Bob/ToptableSelected.jpg
inst/doc/Bob/OpeningBobLimma.jpg
inst/doc/Bob/SaveAsSelected.jpg
inst/doc/Bob/CalculateDupCor.jpg
inst/doc/Bob/LinearModelComputed.jpg
inst/doc/Bob/ComputeLinearModelFitSelected.jpg
inst/etc/hist.R
inst/etc/recent-files.txt
inst/etc/limmaGUI-menus.txt
