Multivariate analysis of microarray data using ADE4

array2ade4 | Converts microarray input data into a data frame suitable for... |

bet.coinertia | Between class coinertia analysis |

between.graph | Plot 1D graph of results from between group analysis |

bga | Between group analysis |

bga.jackknife | Jackknife between group analysis |

bga.suppl | Between group analysis with supplementary data projection |

checkfac | Check factor |

chime3D | Produce web graph of 3D graph that can be viewed using Chime... |

cia | Coinertia analysis: Explore the covariance between two... |

commonMap | Highlight common points between two 1D plots |

comparelists | Return the intersect, difference and union between 2 vectors |

do3d | Generate 3D graph(s) using scatterplot3d |

dudi.rwcoa | Row weighted Correspondence Analysis |

forrwcoa | Row weighted Correspondence Analysis |

genes | Returns an index of the top N variables at the ends of the x... |

genes1d | genes1d: list top N variables on one axis. Lists the maximum... |

getcol | Specialised colour palette with set of 21 maximally... |

getdata | Check dataset |

graph1D | Plot 1D graph of axis from multivariate analysis |

heatplot | Draws heatmap with dendrograms. |

html3D | Produce web page with a 3D graph that can be viewed using... |

jmol3D | Produce web graph of 3D graph that can be viewed using Jmol... |

khan | Microarray gene expression dataset from Khan et al., 2001.... |

NCI60 | Microarray gene expression profiles of the NCI 60 cell lines |

ord | Ordination |

overview | Draw boxplot, histogram and hierarchical tree of gene... |

plotarrays | Graph xy plot of variable (array) projections from... |

plotgenes | Graph xy plot of variable (gene) projections from PCA or COA.... |

prettyDend | Draw hierarchical tree of gene expression data with a... |

randomiser | Randomly reassign training and test samples |

sumstats | Summary statistics on xy co-ordinates, returns the slopes and... |

suppl | Projection of supplementary data onto axes from a between... |

s.var | Draw xy plots of results of multivariate analysis |

topgenes | Topgenes, returns a list of variables at the ends (positive,... |

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