Man pages for made4
Multivariate analysis of microarray data using ADE4

array2ade4Converts microarray input data into a data frame suitable for...
bet.coinertiaBetween class coinertia analysis
between.graphPlot 1D graph of results from between group analysis
bgaBetween group analysis
bga.jackknifeJackknife between group analysis
bga.supplBetween group analysis with supplementary data projection
checkfacCheck factor
chime3DProduce web graph of 3D graph that can be viewed using Chime...
ciaCoinertia analysis: Explore the covariance between two...
commonMapHighlight common points between two 1D plots
comparelistsReturn the intersect, difference and union between 2 vectors
do3dGenerate 3D graph(s) using scatterplot3d
dudi.rwcoaRow weighted Correspondence Analysis
forrwcoaRow weighted Correspondence Analysis
genesReturns an index of the top N variables at the ends of the x...
genes1dgenes1d: list top N variables on one axis. Lists the maximum...
getcolSpecialised colour palette with set of 21 maximally...
getdataCheck dataset
graph1DPlot 1D graph of axis from multivariate analysis
heatplotDraws heatmap with dendrograms.
html3DProduce web page with a 3D graph that can be viewed using...
jmol3DProduce web graph of 3D graph that can be viewed using Jmol...
khanMicroarray gene expression dataset from Khan et al., 2001....
NCI60Microarray gene expression profiles of the NCI 60 cell lines
ordOrdination
overviewDraw boxplot, histogram and hierarchical tree of gene...
plotarraysGraph xy plot of variable (array) projections from...
plotgenesGraph xy plot of variable (gene) projections from PCA or COA....
prettyDendDraw hierarchical tree of gene expression data with a...
randomiserRandomly reassign training and test samples
sumstatsSummary statistics on xy co-ordinates, returns the slopes and...
supplProjection of supplementary data onto axes from a between...
s.varDraw xy plots of results of multivariate analysis
topgenesTopgenes, returns a list of variables at the ends (positive,...
made4 documentation built on May 2, 2018, 2:37 a.m.