dotplot: Dotplot representation of splicing events.

Description Usage Arguments Value Examples

View source: R/plotEvents.R

Description

Dotplot representation of splicing events.

Usage

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dotplot(events, type = c("A3SS", "A5SS", "SE", "RI", "MXE"), fdr = 0.05,
  deltaPSI = 0.1)

Arguments

events

a maser object.

type

character indicating splice type. Possible values are c("A3SS", "A5SS", "SE", "RI", "MXE")

fdr

numeric, FDR (False Discovery Rate) cutoff.

deltaPSI

numeric, absolute minimum PSI (Percent spliced-in) change

Value

a ggplot object.

Examples

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path <- system.file("extdata", file.path("MATS_output"), package = "maser")
hypoxia <- maser(path, c("Hypoxia 0h", "Hypoxia 24h"))
hypoxia_filt <- filterByCoverage(hypoxia, avg_reads = 5)
dotplot(hypoxia_filt, type = "SE")

maser documentation built on March 16, 2021, 6:01 p.m.