meshes: MeSH Enrichment and Semantic analyses
Version 1.2.0

MeSH (Medical Subject Headings) is the NLM controlled vocabulary used to manually index articles for MEDLINE/PubMed. MeSH terms were associated by Entrez Gene ID by three methods, gendoo, gene2pubmed and RBBH. This association is fundamental for enrichment and semantic analyses. meshes supports enrichment analysis (over-representation and gene set enrichment analysis) of gene list or whole expression profile. The semantic comparisons of MeSH terms provide quantitative ways to compute similarities between genes and gene groups. meshes implemented five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively and supports more than 70 species.

Package details

AuthorGuangchuang Yu [aut, cre]
Bioconductor views Annotation Clustering MultipleComparison Software
MaintainerGuangchuang Yu <[email protected]>
LicenseArtistic-2.0
Version1.2.0
URL https://guangchuangyu.github.io/meshes
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("meshes")

Try the meshes package in your browser

Any scripts or data that you put into this service are public.

meshes documentation built on May 31, 2017, 11:47 a.m.