Description Usage Arguments Value Author(s) See Also Examples
MeSH term enrichment analysis
1 2 3 4 5 6 7 8 9 10 11 12 | enrichMeSH(
gene,
MeSHDb,
database = "gendoo",
category = "C",
pvalueCutoff = 0.05,
pAdjustMethod = "BH",
universe,
qvalueCutoff = 0.2,
minGSSize = 10,
maxGSSize = 500
)
|
gene |
a vector of entrez gene id |
MeSHDb |
MeSHDb |
database |
one of 'gendoo', 'gene2pubmed' or 'RBBH' |
category |
one of "A", "B", "C", "D", "E", "F", "G", "H", "I", "J", "K", "L","M", "N", "V", "Z" |
pvalueCutoff |
Cutoff value of pvalue. |
pAdjustMethod |
one of "holm", "hochberg", "hommel", "bonferroni", "BH", "BY", "fdr", "none" |
universe |
background genes |
qvalueCutoff |
qvalue cutoff |
minGSSize |
minimal size of genes annotated by Ontology term for testing. |
maxGSSize |
maximal size of genes annotated for testing |
An enrichResult
instance.
Guangchuang Yu
1 2 3 4 5 6 |
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.