geneSim: geneSim

Description Usage Arguments Value Author(s) Examples

View source: R/geneSim.R

Description

semantic similarity between two gene vector

Usage

1
2
geneSim(geneID1, geneID2 = NULL, measure = "Wang", combine = "BMA",
  semData)

Arguments

geneID1

gene ID vector

geneID2

gene ID vector

measure

one of "Wang", "Resnik", "Rel", "Jiang" and "Lin"

combine

One of "max", "avg", "rcmax", "BMA" methods, for combining semantic similarity scores of multiple DO terms associated with gene/protein.

semData

gene annotation data for semantic measurement

Value

score matrix

Author(s)

Guangchuang Yu

Examples

1
2
3
## hsamd <- meshdata("MeSH.Hsa.eg.db", category='A', computeIC=T, database="gendoo")
data(hsamd)
geneSim("241", "251", semData=hsamd, measure="Wang", combine="BMA")

meshes documentation built on May 31, 2017, 11:47 a.m.

Search within the meshes package
Search all R packages, documentation and source code