metaArray: Integration of Microarray Data for Meta-analysis

1) Data transformation for meta-analysis of microarray Data: Transformation of gene expression data to signed probability scale (MCMC/EM methods) 2) Combined differential expression on raw scale: Weighted Z-score after stabilizing mean-variance relation within platform

Author
Debashis Ghosh <ghoshd@psu.edu> Hyungwon Choi <hyung_won_choi@nuhs.edu.sg>
Date of publication
None
Maintainer
Hyungwon Choi <hyung_won_choi@nuhs.edu.sg>
License
LGPL-2
Version
1.52.0

View on Bioconductor

Man pages

em.draw
Plot of transformed expression produced by EM algorithm
find.init
Initialization of EM algorithm
fit.em
Probability of expresison from mixture distribution for a...
intcor
Integrative Correlation Analysis
logit
Logit transform
mdata
metaArray sample dataset
poe.em
Probability of Expression from mixture distribution for...
poe.mcmc
Probability of Expression (POE)
Zscore
Meta-analysis of Microarray Data from Different Platforms

Files in this package

metaArray/DESCRIPTION
metaArray/NAMESPACE
metaArray/R
metaArray/R/Zscore.R
metaArray/R/em.draw.R
metaArray/R/find.init.R
metaArray/R/fit.em.R
metaArray/R/intcor.R
metaArray/R/logit.R
metaArray/R/poe.em.R
metaArray/R/poe.mcmc.R
metaArray/build
metaArray/build/vignette.rds
metaArray/data
metaArray/data/datalist
metaArray/data/mdata.R
metaArray/inst
metaArray/inst/doc
metaArray/inst/doc/metaArray.R
metaArray/inst/doc/metaArray.Rnw
metaArray/inst/doc/metaArray.pdf
metaArray/man
metaArray/man/Zscore.Rd
metaArray/man/em.draw.Rd
metaArray/man/find.init.Rd
metaArray/man/fit.em.Rd
metaArray/man/intcor.Rd
metaArray/man/logit.Rd
metaArray/man/mdata.Rd
metaArray/man/poe.em.Rd
metaArray/man/poe.mcmc.Rd
metaArray/src
metaArray/src/Makevars
metaArray/src/Makevars.win
metaArray/src/contr.c
metaArray/src/dproc.c
metaArray/src/dproc2.c
metaArray/src/intcor.c
metaArray/src/lowess.c
metaArray/src/meta.h
metaArray/src/mmath.c
metaArray/src/perm.c
metaArray/src/poe.c
metaArray/vignettes
metaArray/vignettes/metaArray.Rnw