Description Usage Arguments Value Author(s)
Given a numeric vector, a plot of four panels is drawn: 1) fitted mixture distribution 2) transformed expression against original expression 3) histogram of original expression 4) progression of log-likelihood during the fit
1 2 | em.draw(vec, cl, threshold=0.0001)
#em.draw(vec, cl=1-metastasis, threshold=0.0001)
|
vec |
A numeric vector, especially a particular row of expression matrix |
cl |
A vector of 0s and 1s. Use 1 for normal phenotype and 0 for non-normal phenotype. If left blank, all samples will be labeled as normal phenotype. Normal component of mixture is estimated using samples with normal phenotype only. POE for samples with non-normal phenotype will be calculated after EM algorithm finishes ML estimation. |
threshold |
Crieterion for convergence in likelihood. |
A plot of four panels will appear upon the call.
Debashis Ghosh <ghoshd@psu.edu> , Hyungwon Choi <hyung_won_choi@nuhs.edu.sg>
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