poe.em: Probability of Expression from mixture distribution for...

In metaArray: Integration of Microarray Data for Meta-analysis

Description

This function applies fit.em function to all rows of a gene expression data matrix.

Usage

  poe.em(mat, cl, threshold=1e-05, every = 100)

Arguments

mat	Gene expression data matrix
cl	A vector of 0s and 1s. Use 1 for normal phenotype and 0 for non-normal phenotype. If all samples are of unknown phenotype, give vectors of 0. This is identical to the poe.mcmc function.
threshold	Criterion of convergence in likelihood
every	Progress of estimation is reported at every integer mode of the value 'every'

Value

A data matrix of transformed expression will result.

Author(s)

Debashis Ghosh <[e-mail]>, Hyungwon Choi <[e-mail]>

metaArray documentation built on April 29, 2020, 2:12 a.m.