poe.em: Probability of Expression from mixture distribution for...

Description Usage Arguments Value Author(s)

Description

This function applies fit.em function to all rows of a gene expression data matrix.

Usage

1
  poe.em(mat, cl, threshold=1e-05, every = 100)

Arguments

mat

Gene expression data matrix

cl

A vector of 0s and 1s. Use 1 for normal phenotype and 0 for non-normal phenotype. If all samples are of unknown phenotype, give vectors of 0. This is identical to the poe.mcmc function.

threshold

Criterion of convergence in likelihood

every

Progress of estimation is reported at every integer mode of the value 'every'

Value

A data matrix of transformed expression will result.

Author(s)

Debashis Ghosh <[email protected]>, Hyungwon Choi <[email protected]>


metaArray documentation built on Nov. 1, 2018, 2:27 a.m.