load.bs.genome: Loads (or downloads) the required BSGenome package

Description Usage Arguments Value Author(s) Examples

View source: R/metaseqr.annotation.R

Description

Retrieves the required BSgenome package when the annotation source is "ucsc" or "refseq". These packages are required in order to estimate the GC-content of the retrieved genes from UCSC or RefSeq.

Usage

1

Arguments

org

one of metaseqr supported organisms.

Value

A proper BSgenome package name.

Author(s)

Panagiotis Moulos

Examples

1
bs.obj <- load.bs.genome("mm9")

metaseqR documentation built on Nov. 8, 2020, 5:57 p.m.