getInstalledAnnotations: Load a metaseqR2 annotation element

In metaseqR2: An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms

Description

This function returns a data frame with information on locally installed, supported or custom, annotations.

Usage

    getInstalledAnnotations(obj = NULL)

Arguments

obj	NULL or the path to a metaseqR2 SQLite annotation database. If NULL, the function will try to guess the location of the SQLite database.

Value

The function returns a data.frame object with the installed local annotations.

Author(s)

Panagiotis Moulos

Examples

db <- file.path(system.file(package="metaseqR2"),
    "annotation.sqlite")
if (file.exists(db))
    ig <- getInstalledAnnotations(obj=db)

metaseqR2 documentation built on Nov. 8, 2020, 7:34 p.m.