API for methimpute
Imputation-guided re-construction of complete methylomes from WGBS data
| Global functions | |
|---|---|
| addDistance | Source code |
| addTransitionContext | Source code |
| arabidopsis_TEs | Man page |
| arabidopsis_chromosomes | Man page |
| arabidopsis_genes | Man page |
| arabidopsis_toydata | Man page |
| binCounts | Man page Source code |
| binMethylome | Man page Source code |
| binPositions | Man page Source code |
| binning | Man page |
| binomialTestMethylation | Man page Source code |
| callMethylation | Man page Source code |
| callMethylationSeparate | Man page Source code |
| check.integer | Source code |
| check.logical | Source code |
| check.nonnegative.integer.vector | Source code |
| check.nonnegative.vector | Source code |
| check.positive | Source code |
| check.positive.integer | Source code |
| check.positive.integer.vector | Source code |
| check.positive.vector | Source code |
| check.strand | Source code |
| cleanup | Source code |
| collapseBins | Man page Source code |
| distanceCorrelation | Man page Source code |
| dnbinom.mean | Source code |
| dnbinom.prob | Source code |
| dnbinom.size | Source code |
| dnbinom.var | Source code |
| estimateTransDist | Man page Source code |
| exportMethylome | Man page Source code |
| extractCytosinesFromFASTA | Man page Source code |
| fitBinomialTestHMMcontextTransition | Source code |
| fitHMM | Source code |
| getDistinctColors | Man page Source code |
| getPosteriors | Man page Source code |
| getStateColors | Man page Source code |
| import | Man page |
| importBSMAP | Man page Source code |
| importBSSeeker | Man page Source code |
| importBismark | Man page Source code |
| importMethylpy | Man page Source code |
| importRene | Man page Source code |
| inflateMethylome | Man page Source code |
| insertNULL | Source code |
| loadFromFiles | Man page Source code |
| messageU | Source code |
| methimpute | Man page |
| methimpute-objects | Man page |
| methimpute-package | Man page |
| methimputeBinomialHMM | Man page |
| methimputeData | Man page |
| parameterScan | Man page Source code |
| permute | Source code |
| plotConvergence | Man page Source code |
| plotEnrichment | Man page Source code |
| plotHistogram | Man page Source code |
| plotPosteriorDistance | Man page Source code |
| plotScatter | Man page Source code |
| plotTransitionDistances | Source code |
| plotTransitionProbs | Man page Source code |
| plotting | Man page |
| print.methimputeBinomialHMM | Man page Source code |
| startTimedMessage | Source code |
| stopTimedMessage | Source code |
| transCoord | Man page Source code |
