API for methimpute
Imputation-guided re-construction of complete methylomes from WGBS data

Global functions
addDistance Source code
addTransitionContext Source code
arabidopsis_TEs Man page
arabidopsis_chromosomes Man page
arabidopsis_genes Man page
arabidopsis_toydata Man page
binCounts Man page Source code
binMethylome Man page Source code
binPositions Man page Source code
binning Man page
binomialTestMethylation Man page Source code
callMethylation Man page Source code
callMethylationSeparate Man page Source code
check.integer Source code
check.logical Source code
check.nonnegative.integer.vector Source code
check.nonnegative.vector Source code
check.positive Source code
check.positive.integer Source code
check.positive.integer.vector Source code
check.positive.vector Source code
check.strand Source code
cleanup Source code
collapseBins Man page Source code
distanceCorrelation Man page Source code
dnbinom.mean Source code
dnbinom.prob Source code
dnbinom.size Source code
dnbinom.var Source code
estimateTransDist Man page Source code
exportMethylome Man page Source code
extractCytosinesFromFASTA Man page Source code
fitBinomialTestHMMcontextTransition Source code
fitHMM Source code
getDistinctColors Man page Source code
getPosteriors Man page Source code
getStateColors Man page Source code
import Man page
importBSMAP Man page Source code
importBSSeeker Man page Source code
importBismark Man page Source code
importMethylpy Man page Source code
importRene Man page Source code
inflateMethylome Man page Source code
insertNULL Source code
loadFromFiles Man page Source code
messageU Source code
methimpute Man page
methimpute-objects Man page
methimpute-package Man page
methimputeBinomialHMM Man page
methimputeData Man page
parameterScan Man page Source code
permute Source code
plotConvergence Man page Source code
plotEnrichment Man page Source code
plotHistogram Man page Source code
plotPosteriorDistance Man page Source code
plotScatter Man page Source code
plotTransitionDistances Source code
plotTransitionProbs Man page Source code
plotting Man page
print.methimputeBinomialHMM Man page Source code
startTimedMessage Source code
stopTimedMessage Source code
transCoord Man page Source code
methimpute documentation built on Nov. 1, 2018, 4:01 a.m.