Files in methimpute
Imputation-guided re-construction of complete methylomes from WGBS data

methimpute.Rproj
NAMESPACE
NEWS
README.md
DESCRIPTION
man/distanceCorrelation.Rd man/import.Rd man/binCounts.Rd man/inflateMethylome.Rd man/getDistinctColors.Rd man/print.methimputeBinomialHMM.Rd man/methimpute-package.Rd man/parameterScan.Rd man/getStateColors.Rd man/callMethylationSeparate.Rd man/binMethylome.Rd man/binomialTestMethylation.Rd man/binPositions.Rd man/arabidopsis_genes.Rd man/plotting.Rd man/arabidopsis_TEs.Rd man/methimpute-objects.Rd man/getPosteriors.Rd man/arabidopsis_chromosomes.Rd man/methimputeData.Rd man/exportMethylome.Rd man/collapseBins.Rd man/callMethylation.Rd man/methimputeBinomialHMM.Rd man/estimateTransDist.Rd man/importRene.Rd man/loadFromFiles.Rd man/arabidopsis_toydata.Rd man/extractCytosinesFromFASTA.Rd man/transCoord.Rd
inst/extdata/arabidopsis_sequence.fa.gz
inst/extdata/arabidopsis_BSMAP.txt
inst/extdata/arabidopsis_bsseeker.txt.gz
inst/extdata/arabidopsis_rene.txt
inst/extdata/arabidopsis_methylpy.txt
inst/extdata/arabidopsis_bismark.txt
inst/doc/methimpute.R inst/doc/methimpute.pdf
inst/doc/methimpute.Rnw
vignettes/methimpute.Rnw
build/vignette.rds
R/RcppExports.R R/importData.R R/methimpute-package.R R/checkUserInput.R R/extractCytosinesFromFASTA.R R/distributions.R R/permute.R R/documented_objects.R R/getDistinctColors.R R/global.R R/binMethylome.R R/parameterScan.R R/printMethods.R R/export.R R/timedMessage.R R/plotting.R R/correlation.R R/callMethylation.R R/getPosteriors.R R/loadFromFiles.R R/addColumns.R R/inflateMethylome.R R/collapseBins.R
data/arabidopsis_chromosomes.RData
data/arabidopsis_TEs.RData
data/arabidopsis_toydata.RData
data/arabidopsis_genes.RData
src/fitHMM.cpp
src/hmm_context.cpp
src/Makevars.win
src/Makevars
src/methimpute_init.c
src/densities.cpp
src/fitHMM_context.cpp
src/RcppExports.cpp
src/scalehmm.cpp
src/hmm_context.h
src/scalehmm.h
src/densities.h
methimpute documentation built on Nov. 17, 2017, 10:15 a.m.