methylGSA: Gene Set Analysis Using the Outcome of Differential Methylation

The main functions for methylGSA are methylglm and methylRRA. methylGSA implements logistic regression adjusting number of probes as a covariate. methylRRA adjusts multiple p-values of each gene by Robust Rank Aggregation. For more detailed help information, please see the vignette.

Package details

AuthorXu Ren [aut, cre], Pei Fen Kuan [aut]
Bioconductor views DNAMethylation DifferentialMethylation GeneRegulation GeneSetEnrichment Pathways Regression
MaintainerXu Ren <[email protected]>
LicenseGPL-2
Version1.0.3
URL https://github.com/reese3928/methylGSA
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("methylGSA")

Try the methylGSA package in your browser

Any scripts or data that you put into this service are public.

methylGSA documentation built on March 4, 2019, 2 a.m.