This function gets CpG IDs and their corresponding gene symbols.
A string. Either "450K" or "EPIC". Default is "450K".
A string. "all", "body", "promoter1" or "promoter2". Default is "all". If group = "body", only CpGs on gene body will be pulled out. If group = "promoter1" or group = "promoter2", only CpGs on promoters will be pulled out. Here is the definition of "body", "promoter1" and "promoter2" according to the annotation in IlluminaHumanMethylation450kanno.ilmn12.hg19 or IlluminaHumanMethylationEPICanno.ilm10b4.hg19.
If group = "all", all CpGs will be pulled out.
The implementation of the function is modified from .flattenAnn function in missMethyl package.
A data frame contains CpG IDs and gene symbols.
Hansen KD (2016). IlluminaHumanMethylation450kanno.ilmn12.hg19: Annotation for Illumina's 450k methylation arrays. R package version 0.6.0.
Hansen KD (2017). IlluminaHumanMethylationEPICanno.ilm10b4.hg19: Annotation for Illumina's EPIC methylation arrays. R package version 0.6.0, https://bitbucket.com/kasperdanielhansen/Illumina_EPIC.
Phipson B, Maksimovic J and Oshlack A (2015). <e2><80><9c>missMethyl: an R package for analysing methylation data from Illuminas HumanMethylation450 platform.<e2><80><9d> Bioinformatics, pp. btv560.
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