summary.mfa: Summarise an mfa fit

In mfa: Bayesian hierarchical mixture of factor analyzers for modelling genomic bifurcations

Description

Returns summary statistics of an mfa fit, including MAP pseudotime and branch allocations along with uncertainties.

Usage

## S3 method for class 'mfa'
summary(object, ...)

Arguments

object	An MFA fit returned by a call to mfa
...	Additional arguments

Value

A data_frame with the following columns:

• pseudotime The MAP pseudotime estimate

• branch The MAP branch estimate

• branch_certainty The proportion of traces for which the cell is assigned to its MAP branch

• pseudotime_lower The lower bound on the 95 (HPD) credible interval

• pseudotime_upper The upper bound on the 95

Examples

synth <- create_synthetic(C = 20, G = 5)
m <- mfa(synth$X)
ms <- summary(m)

Example output

Sampling for 20 cells and 5 genes
Warning messages:
1: `as_data_frame()` is deprecated as of tibble 2.0.0.
Please use `as_tibble()` instead.
The signature and semantics have changed, see `?as_tibble`.
This warning is displayed once every 8 hours.
Call `lifecycle::last_warnings()` to see where this warning was generated. 
2: The `x` argument of `as_tibble.matrix()` must have unique column names if `.name_repair` is omitted as of tibble 2.0.0.
Using compatibility `.name_repair`.
This warning is displayed once every 8 hours.
Call `lifecycle::last_warnings()` to see where this warning was generated. 

mfa documentation built on Nov. 8, 2020, 8:10 p.m.