miRBaseConverter
is an R/Bioconductor package for converting and retrieving the definition of miRNAs ( Names, Accessions, Sequences, Families and others) in different miRBase versions ( From miRBase version 6 to version 22 [ The latest version ] ). A tiny built-in database is embedded in the miRBaseConverter
R package for retrieving miRNA information efficiently.
{r,eval=FALSE,warning=FALSE,message=FALSE}
devtools::install_github("taoshengxu/miRBaseConverter")
The tutorial and examples of miRBaseConverter
pacakge can be found here.
The online application with interactive interface of this package can be accessed in http://nugget.unisa.edu.au:3838/miRBaseConverter or
https://taoshengxu.shinyapps.io/miRBaseConverter/.
Please cite the following article when using miRBaseConverter
:
Taosheng Xu, Ning Su, Lin Liu, Junpeng Zhang, Hongqiang Wang, Jie Gui, Kui Yu, Jiuyong Li, Thuc Duy Le. miRBaseConverter: An R/Bioconductor Package for Converting and Retrieving miRNA Name, Accession, Sequence and Family Information in Different Versions of miRBase. BioRxiv 407148, doi: https://doi.org/10.1101/407148
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