miRNA_PrecursorToMature: Convert the precursors to the corresponding mature miRNAs

Description Usage Arguments Value Note Author(s) Examples

View source: R/miRBaseConvert.R

Description

This function converts the precursors to the corresponding mature miRNAs in the specified miRBase version.

Usage

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Arguments

miRNANames

A character vector representing the miRNA names.

version

The default is NULL representing the most possible latest version of the input miRNA Names will be checked automatically. Otherwise, a character value representing the version corresponding the input miRNA Names. Users can apply the function getAllVersionInfo() to get the available miRNA version names. The optional values are in below:
"v6","v7_1","v8","v8_1","v8_2","v9","v9_1","v9_2","v10","v10_1","v11","v12","v13","v14",
"v15","v16","v17","v18","v19","v20","v21","v22"

Value

A data frame(nx3). The number of rows equal to the input miRNA names. The three columns are defined as below:

Note

If the input miRNA Names mingle mature miRNA names, the mature miRNA names will match to themselves in the output.

Author(s)

Xu, Taosheng taosheng.x@gmail.com

Examples

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miRNANames=c("pma-mir-100a","sko-mir-92a","hsa-mir-6131","mtr-MIR2655i",
"mmu-mir-153","mtr-MIR2592am","mml-mir-1239","xtr-mir-128-2","oan-mir-100",
"mmu-mir-378b","hsa-miR-508-5p","mmu-miR-434-3p")
result=miRNA_PrecursorToMature(miRNANames)

miRBaseConverter documentation built on April 29, 2020, 5:18 a.m.