querymiRTargetbinding: Query miRNA-target interactions by combining expression data...

Description Usage Arguments Value Author(s) Examples

View source: R/miRsponge.R

Description

Query miRNA-target interactions by combining expression data and putative miRNA-target interactions.

Usage

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querymiRTargetbinding(ExpData, miRTarget)

Arguments

ExpData

An input gene expression data frame, the rows are samples and the columns are genes.

miRTarget

An input miRNA-target interaction data frame, the first column is miRNA with name "mir" and the second column is target with name "gene".

Value

A list of queried miRNA-target interactions

Author(s)

Junpeng Zhang (https://www.researchgate.net/profile/Junpeng_Zhang3)

Examples

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# Obtain expression data file "ExpData.csv" in csv format
ExpDatacsv <- system.file("extdata","ExpData.csv",package="miRsponge")
ExpData <- read.csv(ExpDatacsv, header=FALSE, sep=",")

# Obtain miRNA-target interaction data file "miR2Target.csv" in csv format
miR2Target <- system.file("extdata", "miR2Target.csv", package="miRsponge")
miRTarget <- read.csv(miR2Target, header=TRUE, sep=",")
miR2Target_queried <- querymiRTargetbinding(ExpData, miRTarget)

miRsponge documentation built on Aug. 11, 2018, 6 p.m.