integrateMethod: Integrate method for identifying miRNA sponge interactions by...

Description Usage Arguments Value Author(s) Examples

View source: R/miRsponge.R

Description

Integrate method for identifying miRNA sponge interactions by integrating different methods.

Usage

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integrateMethod(Interlist, Intersect_num)

Arguments

Interlist

List object, a list of miRNA sponge interactions from different methods.

Intersect_num

The least number of different methods intersected for integration. The value of 1 means the union of miRNA sponge interactions from different methods.

Value

A list of integrated miRNA sponge interactions.

Author(s)

Junpeng Zhang (https://www.researchgate.net/profile/Junpeng_Zhang3)

Examples

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# Obtain expression data file "ExpData.csv" in csv format
ExpDatacsv <- system.file("extdata","ExpData.csv",package="miRsponge")
ExpData <- read.csv(ExpDatacsv, header=FALSE, sep=",")

# Obtain miRNA-target interaction data file "miR2Target.csv" in csv format
miR2Target <- system.file("extdata", "miR2Target.csv", package="miRsponge")
miRTarget <- read.csv(miR2Target, header=TRUE, sep=",")
miRHomologyceRInt <- spongeMethod(miRTarget, method = "miRHomology")
pcceRInt <- spongeMethod(miRTarget, ExpData, method = "pc")
sppcceRInt <- spongeMethod(miRTarget, ExpData, method = "sppc")
Interlist <- list(miRHomologyceRInt[, 1:2], pcceRInt[, 1:2], sppcceRInt[, 1:2])
IntegrateceRInt <- integrateMethod(Interlist, 2)

miRsponge documentation built on Nov. 1, 2018, 2:57 a.m.