integrateMethod: Integrate method for identifying miRNA sponge interactions by...

In miRspongeR: Identification and analysis of miRNA sponge interaction networks and modules

Description

Integrate method for identifying miRNA sponge interactions by integrating different methods.

Usage

integrateMethod(Interlist, Intersect_num)

Arguments

Interlist	List object, a list of miRNA sponge interactions from different methods.
Intersect_num	The least number of different methods intersected for integration. The value of 1 means the union of miRNA sponge interactions from different methods.

Value

A list of integrated miRNA sponge interactions.

Author(s)

Junpeng Zhang (https://www.researchgate.net/profile/Junpeng_Zhang3)

Examples

# Obtain expression data file "ExpData.csv" in csv format
ExpDatacsv <- system.file("extdata","ExpData.csv",package="miRspongeR")
ExpData <- read.csv(ExpDatacsv, header=FALSE, sep=",", stringsAsFactors = TRUE)

# Obtain miRNA-target interaction data file "miR2Target.csv" in csv format
miR2Target <- system.file("extdata", "miR2Target.csv", package="miRspongeR")
miRTarget <- read.csv(miR2Target, header=TRUE, sep=",")
miRHomologyceRInt <- spongeMethod(miRTarget, method = "miRHomology")
pcceRInt <- spongeMethod(miRTarget, ExpData, method = "pc")
sppcceRInt <- spongeMethod(miRTarget, ExpData, method = "sppc")
Interlist <- list(miRHomologyceRInt[, 1:2], pcceRInt[, 1:2], sppcceRInt[, 1:2])
IntegrateceRInt <- integrateMethod(Interlist, 2)

miRspongeR documentation built on Nov. 19, 2020, 2:01 a.m.