API for motifbreakR
A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites
| Global functions | |
|---|---|
| DNAmotifAlignment.2snp | Source code |
| addPWM.stack | Source code |
| calculatePvalue | Man page Source code |
| change.to.search.genome | Source code |
| determine.allele.from.ambiguous | Source code |
| encodemotif | Man page |
| example.results | Man page |
| factorbook | Man page |
| formatVcfOut | Source code |
| hocomoco | Man page |
| homer | Man page |
| maxThresholdWindows | Source code |
| motifbreakR | Man page Source code |
| motifbreakR_motif | Man page |
| plotMB | Man page Source code |
| plotMotifLogoStack.2 | Source code |
| plotMotifLogoStack.3 | Source code |
| preparePWM | Source code |
| prepareVariants | Source code |
| revcom | Source code |
| reverseComplementMotif | Source code |
| scoreAllWindows | Man page Source code |
| scoreIndel | Source code |
| scoreSeqWindows | Source code |
| scoreSnpList | Source code |
| selall | Source code |
| selcor | Source code |
| snps.from.file | Man page Source code |
| snps.from.rsid | Man page Source code |
| strSort | Source code |
| unlistColumn | Source code |
| updateResultsIndel | Source code |
| updateResultsSnv | Source code |
| varEff | Source code |
| variants.from.file | Source code |
| wScore | Source code |
