scoreAllWindows: scoreMotif.a <- function(snp.seq, ppm, len, offset = 1)...
In motifbreakR: A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites
Description
scoreMotif.a <- function(snp.seq, ppm, len, offset = 1)
snp.seq <- snp.seq[offset:(offset + len - 1)]
## diag code
position.probs <- c(ppm[snp.seq, ])[1L + 0L:(len - 1L) * (len + 1L)]
return(position.probs)
#' @importFrom compiler cmpfun
scoreMotif <- cmpfun(scoreMotif.a, options = list(optimize = 3))
Usage
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scoreAllWindows(
snp.seq,
snp.seq.rc,
pwm,
from = "default",
to = "default",
pwm.range = NULL,
calcp = TRUE
)
motifbreakR documentation built on Nov. 8, 2020, 5:31 p.m.
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Description
scoreMotif.a <- function(snp.seq, ppm, len, offset = 1) snp.seq <- snp.seq[offset:(offset + len - 1)] ## diag code position.probs <- c(ppm[snp.seq, ])[1L + 0L:(len - 1L) * (len + 1L)] return(position.probs) #' @importFrom compiler cmpfun scoreMotif <- cmpfun(scoreMotif.a, options = list(optimize = 3))
Usage
1 2 3 4 5 6 7 8 9 | scoreAllWindows(
snp.seq,
snp.seq.rc,
pwm,
from = "default",
to = "default",
pwm.range = NULL,
calcp = TRUE
)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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