API for msPurity
Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics

Global functions
CV Source code
CosSim Source code
Getfiles Man page Source code
MHmakeRandomString Source code
addGenericMS1LookupResults Source code
addMetFragResults Source code
addProbmetab Source code
addProbmetabResults Source code
addSiriusResults Source code
add_mzi_cols Source code
adductCheckMS1Lookup Source code
align Source code
alignAndMatch Source code
assessPuritySingle Man page Source code
averageAllFragSpectra Man page
averageAllFragSpectra,purityA-method Man page
averageCluster Source code
averageInterFragSpectra Man page
averageInterFragSpectra,purityA-method Man page
averageIntraFragSpectra Man page
averageIntraFragSpectra,purityA-method Man page
averageSpectra Man page
averageSpectra,purityD-method Man page
averageSpectraSingle Man page Source code
average_spectra Source code
average_xcms_grouped_msms Source code
average_xcms_grouped_msms_indiv Source code
calculateFWHM Source code
cdpc Source code
check_ppm Source code
check_topn Source code
cleanUp Source code
clustering Source code
combineAnnotations Man page Source code
combineRow Source code
combineScoresGrp Source code
concat_name Source code
connect2db Source code
convert2Raw Source code
covar Source code
createDatabase Man page Source code
createMSP Man page
createMSP,purityA-method Man page
create_database Man page Source code
create_enriched_peaklist Source code
custom_dbWriteTable Source code Source code
dimsPredictPurity Man page
dimsPredictPurity,purityD-method Man page
dimsPredictPuritySingle Man page Source code
dimsPredictPuritySingleMz Source code
dpc Source code
export2sqlite Source code
export_2_sqlite Source code
filterFragSpectra Man page
filterFragSpectra,purityA-method Man page
filterPrecursors Source code
filterSMeta Source code
filterp Man page
filterp,purityD-method Man page
flag_peaks Source code
flag_remove Man page Source code
frag4feature Man page
frag4feature,purityA-method Man page
fsub1 Source code
fsub2 Source code
full_minmax Source code
getAnnotationSummary Source code
getAvSpectraForGrp Source code
getBestScore Source code
getBoundedSiriusScore Source code
getEic Source code
getGroupPeakLink Source code
getMS2scans Source code
getMetaCols Source code
getP Man page
getP,purityD-method Man page
getPeakCols Source code
getScanLoop Source code
getScanPeaks Source code
getScanPeaksSqlite Source code
getSmeta Source code
getTic Source code
getXcmsGrpDetails Source code
getXcmsSmSummary Source code
get_additional_mzml_meta Man page Source code
get_ann_summary Source code
get_av_spectra_for_db Source code
get_column_info Source code Source code
get_create_query Source code Source code
get_full_peak_width Source code
get_group_peak_link Source code
get_init_purity Source code
get_interp_purity Source code
get_iso_intensity_range Source code
get_isolation_offsets Source code
get_mslevel_tracking Source code
get_mz_sim_scanid Source code
get_prec_scans Source code
get_query_spectra_list_c_peak_group Source code
get_query_spectra_list_s_peak Source code
get_rt_idx Source code
get_topn Source code
get_xcms_sm_summary Source code
getmrdf Source code
getmrdf_standard Source code
getmrdf_standard_all Source code
getname Source code
getpeaks Source code
getscans Source code
getxcmsSetObject Source code
group1d Source code
groupPeaks Man page
groupPeaks,purityD-method Man page
groupPeaksEx Man page Source code
grpByXCMS Source code
im_tag Source code
inchikeyInsert Source code
inchikeySelect Source code
initialize,purityD-method Man page
insertNewInchikeys Source code
iwNormGauss Man page Source code
iwNormQE.5 Man page Source code
iwNormRcosine Man page Source code
linearPurity Source code
match_2_library Source code
match_targets Source code
matchi Source code
medGroup Source code
median_match_results Source code
missing_prec_scan Source code
msPurity Man page
msfrProcess Source code
mzComparePPMrange Source code
mzMLProcess Source code
mzmatching Source code
negMinMax Source code
overlap Source code
parse_file Source code
pcalc Man page Source code
performHc Source code
plotPurity Source code
pp4file Source code
ppm_error Source code
predictPurityExp Source code
predictPurityLCMSloop Source code
pullPid Source code
purityA Man page Source code
purityD Man page
purityD-class Man page
purityX Man page Source code
queryVlibrary Source code
queryVlibrarySingle Source code
ra_calc Source code
real_or_rest Source code Source code
removeIsotopes Source code
remove_spectra Source code
resetGrpedMS2 Source code
rsd Source code
rsde Source code
scanPeaks4db Source code
scanPeaksFromfiledf Source code
scan_peaks_4_db Source code
setFlagMatrix Source code
setPurityFlagMatrix Source code
setPuritySpectraGrp Source code
set_snr_ra Source code
show,purityA-method Man page
show,purityD-method Man page
show,purityX-method Man page
snrFilter Source code
spectralMatching Man page Source code
spectral_matching Man page Source code
splinePurity Source code
splitInchis Source code
stde Source code Source code
stderror Source code
subtract Man page
subtract,purityD-method Man page
subtractMZ Man page Source code
subtractSingle Source code
sum_calc_peaklist Source code
updateCol Source code
updateColName Source code
update_cn_order Source code Source code
validate Man page
validate,purityA-method Man page
vecToStringInStmt Source code
vecToStringInsertStmt Source code
write.msp Source code
writeOut Man page
writeOut,purityD-method Man page
write_msp_single Source code
xcmsGroupPurity Source code
xcmsSinglePurity Source code
msPurity documentation built on Jan. 14, 2021, 2:44 a.m.