API for msa
Multiple Sequence Alignment
| Global functions | |
|---|---|
| MsaAAMultipleAlignment | Man page |
| MsaAAMultipleAlignment-class | Man page |
| MsaDNAMultipleAlignment | Man page |
| MsaDNAMultipleAlignment-class | Man page |
| MsaMetaData | Man page |
| MsaMetaData-class | Man page |
| MsaRNAMultipleAlignment | Man page |
| MsaRNAMultipleAlignment-class | Man page |
| checkDoubleGivenType | Source code |
| checkFunctionAvailable | Source code |
| checkGapExtension | Source code |
| checkGapOpening | Source code |
| checkGapOpening2 | Source code |
| checkInFile | Source code |
| checkInputSeq | Source code |
| checkIntegerParams | Source code |
| checkIntegerParamsNew | Source code |
| checkIntervalParams | Source code |
| checkIntervalParamsNew | Source code |
| checkIsValue | Source code |
| checkLogicalParams | Source code |
| checkMaxiters | Source code |
| checkNegativeParams | Source code |
| checkNumericParams | Source code |
| checkNumericParamsNew | Source code |
| checkOneType | Source code |
| checkOutFile | Source code |
| checkPositiveParams | Source code |
| checkProfileScore | Source code |
| checkProfileScoreNew | Source code |
| checkSingleValParams | Source code |
| checkSingleValParamsNew | Source code |
| checkString | Source code |
| checkType | Source code |
| checkValueParams | Source code |
| checkVerbose | Source code |
| class:MsaAAMultipleAlignment | Man page |
| class:MsaDNAMultipleAlignment | Man page |
| class:MsaMetaData | Man page |
| class:MsaRNAMultipleAlignment | Man page |
| convertAlnRows | Source code |
| convertStringToVector | Source code |
| getParamsList | Source code |
| getTypeOfInputSeq | Source code |
| interactiveCheck | Source code |
| msa | Man page Source code |
| msa-package | Man page |
| msaCheckNames | Man page Source code |
| msaClustalOmega | Man page Source code |
| msaClustalW | Man page Source code |
| msaConsensusSequence | Man page |
| msaConsensusSequence,MultipleAlignment-method | Man page |
| msaConsensusSequence,matrix-method | Man page |
| msaConsensusSequence.matrix | Source code |
| msaConservationScore | Man page |
| msaConservationScore,MultipleAlignment-method | Man page |
| msaConservationScore,matrix-method | Man page |
| msaConservationScore.matrix | Source code |
| msaConvert | Man page Source code |
| msaMuscle | Man page Source code |
| msaPackage | Man page |
| msaPrettyPrint | Man page Source code |
| params,MsaAAMultipleAlignment-method | Man page |
| params,MsaDNAMultipleAlignment-method | Man page |
| params,MsaMetaData-method | Man page |
| params,MsaRNAMultipleAlignment-method | Man page |
| print,MsaAAMultipleAlignment-method | Man page |
| print,MsaDNAMultipleAlignment-method | Man page |
| print,MsaRNAMultipleAlignment-method | Man page |
| print.MsaMetaData | Source code |
| print.MsaMultipleAlignment | Source code |
| print.MsaMultipleAlignmentChunk | Source code |
| printHelp | Source code |
| printParams | Source code |
| show,MsaAAMultipleAlignment-method | Man page |
| show,MsaDNAMultipleAlignment-method | Man page |
| show,MsaRNAMultipleAlignment-method | Man page |
| stratifyFilenames | Source code |
| transformInputSeq | Source code |
| version | Man page |
| version,MsaAAMultipleAlignment-method | Man page |
| version,MsaDNAMultipleAlignment-method | Man page |
| version,MsaMetaData-method | Man page |
| version,MsaRNAMultipleAlignment-method | Man page |
