API for msa
Multiple Sequence Alignment

Global functions
MsaAAMultipleAlignment Man page
MsaAAMultipleAlignment-class Man page
MsaDNAMultipleAlignment Man page
MsaDNAMultipleAlignment-class Man page
MsaMetaData Man page
MsaMetaData-class Man page
MsaRNAMultipleAlignment Man page
MsaRNAMultipleAlignment-class Man page
checkDoubleGivenType Source code
checkFunctionAvailable Source code
checkGapExtension Source code
checkGapOpening Source code
checkGapOpening2 Source code
checkInFile Source code
checkInputSeq Source code
checkIntegerParams Source code
checkIntegerParamsNew Source code
checkIntervalParams Source code
checkIntervalParamsNew Source code
checkIsValue Source code
checkLogicalParams Source code
checkMaxiters Source code
checkNegativeParams Source code
checkNumericParams Source code
checkNumericParamsNew Source code
checkOneType Source code
checkOutFile Source code
checkPositiveParams Source code
checkProfileScore Source code
checkProfileScoreNew Source code
checkSingleValParams Source code
checkSingleValParamsNew Source code
checkString Source code
checkType Source code
checkValueParams Source code
checkVerbose Source code
class:MsaAAMultipleAlignment Man page
class:MsaDNAMultipleAlignment Man page
class:MsaMetaData Man page
class:MsaRNAMultipleAlignment Man page
convertAlnRows Source code
convertStringToVector Source code
getParamsList Source code
getTypeOfInputSeq Source code
interactiveCheck Source code
msa Man page Source code
msa-package Man page
msaCheckNames Man page Source code
msaClustalOmega Man page Source code
msaClustalW Man page Source code
msaConsensusSequence Man page
msaConsensusSequence,MultipleAlignment-method Man page
msaConsensusSequence,matrix-method Man page
msaConsensusSequence.matrix Source code
msaConservationScore Man page
msaConservationScore,MultipleAlignment-method Man page
msaConservationScore,matrix-method Man page
msaConservationScore.matrix Source code
msaConvert Man page Source code
msaMuscle Man page Source code
msaPackage Man page
msaPrettyPrint Man page Source code
params,MsaAAMultipleAlignment-method Man page
params,MsaDNAMultipleAlignment-method Man page
params,MsaMetaData-method Man page
params,MsaRNAMultipleAlignment-method Man page
print,MsaAAMultipleAlignment-method Man page
print,MsaDNAMultipleAlignment-method Man page
print,MsaRNAMultipleAlignment-method Man page
print.MsaMetaData Source code
print.MsaMultipleAlignment Source code
print.MsaMultipleAlignmentChunk Source code
printHelp Source code
printParams Source code
show,MsaAAMultipleAlignment-method Man page
show,MsaDNAMultipleAlignment-method Man page
show,MsaRNAMultipleAlignment-method Man page
stratifyFilenames Source code
transformInputSeq Source code
version Man page
version,MsaAAMultipleAlignment-method Man page
version,MsaDNAMultipleAlignment-method Man page
version,MsaMetaData-method Man page
version,MsaRNAMultipleAlignment-method Man page
msa documentation built on May 2, 2018, 4:23 a.m.