list_multimir: List microRNAs, Genes, Drugs Or Diseases in the multiMiR...

In multiMiR: Integration of multiple microRNA-target databases with their disease and drug associations

Description

list_multimir lists all the unique microRNAs, target genes, drugs, or diseases in the web server of the multiMiR package.

Usage

list_multimir(x = c("mirna", "gene", "drug", "disease"), limit = NULL,
  url = NULL)

list.multimir(x = c("mirna", "gene", "drug", "disease"), limit = NULL,
  url = NULL)

Arguments

x	a character string indicating what to list. This must be one of the strings "mirna" (default), "gene", "drug", or "disease". This can be abbreviated and is case insensitive.
limit	a positive integer. Limits the number of records returned from each table. Useful in testing potentially large queries.
url	Deprecated. Use global option multimir.url instead.

Details

list.multimir() has been deprecated and replaced with the list_multimir() version.

Value

list_multimir returns a data frame with information of microRNAs (microRNA unique ID, organism, mature microRNA accession number, and mature microRNA ID), target genes (gene unique ID, organism, gene symbol, Entrez gene ID, and Ensembl gene ID), drugs (drug names), and diseases (disease name).

Author(s)

Yuanbin Ru [e-mail]

Examples

  miRNAs <- list_multimir("mirna", limit = 10)
  genes <- list_multimir("gene", limit = 10)
  drugs <- list_multimir("drug", limit = 10)
  diseases <- list_multimir("disease", limit = 10)

multiMiR documentation built on Nov. 8, 2020, 5:46 p.m.