Description Usage Arguments Value Slots
This package's primary user-facing object. Contains the SQL statement and the
returned data query, as well as a summary table depending on
specified option. Note that the returned data is now contained in a single
dataframe. To filter to a specific type of association or interaction,
select
on the type
variable.
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## S4 method for signature 'mmquery_bioc'
columns(x)
## S4 method for signature 'mmquery_bioc'
keys(x, keytype, ...)
## S4 method for signature 'mmquery_bioc'
keytypes(x)
## S4 method for signature 'mmquery_bioc'
select(x, keys, columns, keytype, ...)
## S4 method for signature 'mmquery_bioc'
show(object)
|
.list |
a list of returned dataframes, summary |
x, object |
An mmquery_bioc object. |
keytype |
allows the user to discover which keytypes can be passes in to select or keys and the keytype argument |
... |
additional arguments |
keys |
A result of the keys() function. For the mmquery_bioc class this is a character vector of microRNA's in the returned mmquery_bioc object. |
columns |
lists the columns that can be returned for the
|
an s4 object of class mmquery_bioc. Contains queried data, a summary dataset, and associated input parameters.
data
A dataframe containing validated and predicted microRNA-target interactions and disease/drug assocations found.
queries
A list of queries submitted to the multiMiR SQL server.
summary
A summary dataframe of the returned microRNA dataframes
tables
A character vector of the microRNA relationship types returned (validated, predicted, disease.drug, or all).
org
The selected organism (hsa/human, mmu/mouse, rno/rat).
predicted.cutoff
An integer giving a prediction score cutoff.
predicted.cutoff.type
A character indicating the type of prediction score cutoff (p = percentage, n = number, character() = none)
predicted.site
A character string indicating the type of predicted target sites to searched.
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