Files in multicrispr

Multi-locus multi-purpose Crispr/Cas design

README.md R/05_manipulate_ranges.R R/02_utilities.R R/07_count_offtargets.R R/04_bed_to_granges.R R/00_imports.R R/09_write_ranges.R R/06_find_spacers.R R/08_score_ontargets.R R/06_find_primespacers.R R/03_plot.R vignettes/genome_arithmetics.Rmd vignettes/crispr_grna_design.Rmd vignettes/prime_editing.Rmd man/add_target_matches.Rd man/plot_intervals.Rd man/add_inverse_strand.Rd man/index_targets.Rd man/bed_to_granges.Rd man/plot_karyogram.Rd man/find_primespacers.Rd man/up_flank.Rd man/extend_for_pe.Rd man/has_been_indexed.Rd man/double_flank.Rd man/extend_pe_to_gg.Rd man/genes_to_granges.Rd man/extract_subranges.Rd man/find_gg.Rd man/write_ranges.Rd man/find_spacers.Rd man/add_seq.Rd man/add_genome_matches.Rd man/extract_matchranges.Rd man/index_genome.Rd man/score_ontargets.Rd man/char_to_granges.Rd man/gr2dt.Rd tests/testthat.R tests/testthat/test_flank.R tests/testthat/test_extend.R tests/testthat/test_read.R inst/doc/genome_arithmetics.R inst/doc/genome_arithmetics.Rmd inst/doc/crispr_grna_design.R inst/doc/crispr_grna_design.Rmd inst/doc/prime_editing.R inst/doc/prime_editing.Rmd inst/scipts/01_annotationhub_resources.R inst/scipts/07_validate_brunello.R inst/scipts/10_compare_offtargetanalysis.R inst/scipts/02_pe_coords_hexa.R inst/scipts/02_pe_coords_prnp.R inst/scipts/04_use_cases.R inst/scipts/08_genome_arithmetics_figure.R inst/scipts/00_filter_offtargetfree_sites.R inst/scipts/02_pe_coords_hbb.R inst/scipts/05_pipeline_for_becnhmarking.R inst/scipts/06_validate_pe.R inst/scipts/02_pe_clinvar.R inst/scipts/02_pe_coords_cftr.R inst/scipts/09_readme_fig.R inst/scipts/03_save_srf_genes.R inst/scipts/06_validate_paralleltargeting.R