char_to_granges: Convert character vector into GRanges

In multicrispr: Multi-locus multi-purpose Crispr/Cas design

Description

Convert character vector into GRanges

Usage

char_to_granges(x, bsgenome)

Arguments

x	character vector
bsgenome	BSgenome-class

Value

GRanges-class

See Also

bed_to_granges, genes_to_granges

Examples

require(magrittr)
bsgenome <- BSgenome.Hsapiens.UCSC.hg38::BSgenome.Hsapiens.UCSC.hg38  
x <- c(PRNP  = 'chr20:4699600:+',            # snp
       HBB  = 'chr11:5227002:-',            # snp
       HEXA = 'chr15:72346580-72346583:-',  # del
       CFTR = 'chr7:117559593-117559595:+') # ins
gr <- char_to_granges(x, bsgenome)
plot_intervals(gr, facet_var = c('targetname', 'seqnames'))

multicrispr documentation built on Nov. 8, 2020, 5:10 p.m.