plot_karyogram: Karyo/Interval Plot GRanges(List)
In multicrispr: Multi-locus multi-purpose Crispr/Cas design
Description
Usage
Arguments
Value
See Also
Examples
Description
Karyo/Interval Plot GRanges(List)
Usage
1
plot_karyogram(grlist, title = unique(genome(grlist)))
Arguments
grlist
GRanges-class
title
plot title
Value
list
See Also
Examples
1
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# Plot GRanges
bedfile <- system.file('extdata/SRF.bed', package = 'multicrispr')
gr <- bed_to_granges(bedfile, 'mm10', plot = FALSE)
plot_karyogram(gr)
# Plot GRangesList
flanks <- up_flank(gr, stranded=FALSE)
grlist <- GenomicRanges::GRangesList(sites = gr, flanks = flanks)
plot_karyogram(grlist)
multicrispr documentation built on Nov. 8, 2020, 5:10 p.m.
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Description Usage Arguments Value See Also Examples
Description
Karyo/Interval Plot GRanges(List)
Usage
1 | plot_karyogram(grlist, title = unique(genome(grlist)))
|
Arguments
grlist |
|
title |
plot title |
Value
list
See Also
Examples
1 2 3 4 5 6 7 8 9 | # Plot GRanges
bedfile <- system.file('extdata/SRF.bed', package = 'multicrispr')
gr <- bed_to_granges(bedfile, 'mm10', plot = FALSE)
plot_karyogram(gr)
# Plot GRangesList
flanks <- up_flank(gr, stranded=FALSE)
grlist <- GenomicRanges::GRangesList(sites = gr, flanks = flanks)
plot_karyogram(grlist)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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