add_genome_matches | Add genome matches |
add_inverse_strand | Add inverse strand |
add_seq | Add sequence to GRanges |
add_target_matches | Add target matches |
bed_to_granges | Read bedfile into GRanges |
char_to_granges | Convert character vector into GRanges |
double_flank | Double flank |
extend_for_pe | Extend ranges for prime editing |
extend_pe_to_gg | Extend prime editing target to find GG sites |
extract_matchranges | Extract matching subranges |
extract_subranges | Extract subranges |
find_gg | Find GG |
find_primespacers | Find prime editing spacers |
find_spacers | Find crispr spacers in targetranges |
genes_to_granges | Convert geneids into GRanges |
gr2dt | GRanges <-> data.table |
has_been_indexed | Has been indexed? |
index_genome | Index genome |
index_targets | Index targets |
plot_intervals | Interval plot GRanges |
plot_karyogram | Karyo/Interval Plot GRanges(List) |
score_ontargets | Add on-target efficiency scores |
up_flank | Extend or Flank GRanges |
write_ranges | Write GRanges to file |
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