get.index: Function to compute indices for ordering hypotheses in...

Description Usage Arguments Value Author(s) See Also Examples

View source: R/zzz.R

Description

The hypotheses tested in a multiple testing procedure (MTP), can be ordered based on the output of that procedure. This function orders hypotheses based on adjusted p-values, then unadjusted p-values (to break ties in adjusted p-values), and finally test statistics (to break remaining ties).

Usage

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get.index(adjp, rawp, stat)

Arguments

adjp

Numeric vector of adjusted p-values.

rawp

Numeric vector of unadjusted ("raw") marginal p-values.

stat

Numeric vector of test statistics.

Value

Numeric vector of indices so that the hypotheses can be ordered accroding to significance (smallest p-values and largest test statistics first). This function is used in the plot method for objects of class MTP to order adjusted p-values for graphical summaries. The summary method for objects of class MTP will return these indices as its second component.

Author(s)

Katherine S. Pollard

See Also

MTP, plot,MTP,ANY-method, summary,MTP-method

Examples

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data<-matrix(rnorm(200),nr=20)
mtp<-MTP(X=data,test="t.onesamp")
index<-get.index(adjp=mtp@adjp,rawp=mtp@rawp,stat=mtp@statistic)
mtp@statistic[index]
mtp@estimate[index]
apply(data[index,],1,mean)

multtest documentation built on Nov. 8, 2020, 11:03 p.m.

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