API for muscat
Multi-sample multi-group scRNA-seq data analysis tools
| Global functions | |
|---|---|
| .DESeq2 | Source code |
| .check_arg_assay | Source code |
| .check_args_aggData | Source code |
| .check_args_mmDS | Source code |
| .check_args_pbDS | Source code |
| .check_args_pbHeatmap | Source code |
| .check_args_simData | Source code |
| .check_frq | Source code |
| .check_pbs | Source code |
| .check_res | Source code |
| .check_sce | Source code |
| .edgeR | Source code |
| .filter_matrix | Source code |
| .filter_sce | Source code |
| .fit_bglmer | Source code |
| .fit_lmer | Source code |
| .fit_nbinom | Source code |
| .get_clusters_from_phylo | Source code |
| .impute_shared_type_genes | Source code |
| .impute_type_genes | Source code |
| .limma | Source code |
| .limma_trend | Source code |
| .limma_voom | Source code |
| .make_ei | Source code |
| .mm_dream | Man page Source code |
| .mm_dream2 | Man page Source code |
| .mm_eBayes | Source code |
| .mm_glmm | Man page Source code |
| .mm_hybrid | Source code |
| .mm_nbinom | Source code |
| .mm_poisson | Source code |
| .mm_vst | Man page Source code |
| .nb | Source code |
| .p_adj_global | Source code |
| .pb | Source code |
| .prep_cd | Source code |
| .read_branch | Source code |
| .res_df | Source code |
| .sample_cell_md | Source code |
| .sample_gene_inds | Source code |
| .sample_n_cells | Source code |
| .scale | Source code |
| .sim | Source code |
| .split_cells | Source code |
| .toySCE | Source code |
| .update_sce | Source code |
| .vst_DESeq2 | Source code |
| .vst_sctransform | Source code |
| .z_norm | Source code |
| aggregateData | Man page Source code |
| calcExprFreqs | Man page Source code |
| data | Man page |
| mmDS | Man page Source code |
| pbDS | Man page Source code |
| pbFlatten | Man page Source code |
| pbHeatmap | Man page Source code |
| pbMDS | Man page Source code |
| prepSCE | Man page Source code |
| prepSim | Man page Source code |
| resDS | Man page Source code |
| sce | Man page |
| simData | Man page Source code |
