mygene: Access MyGene.Info_ services
Version 1.12.0

MyGene.Info_ provides simple-to-use REST web services to query/retrieve gene annotation data. It's designed with simplicity and performance emphasized. *mygene*, is an easy-to-use R wrapper to access MyGene.Info_ services.

Browse man pages Browse package API and functions Browse package files

AuthorAdam Mark, Ryan Thompson, Cyrus Afrasiabi, Chunlei Wu
Bioconductor views Annotation
Date of publicationNone
MaintainerAdam Mark, Cyrus Afrasiabi, Chunlei Wu <cwu@scripps.edu>
LicenseArtistic-2.0
Version1.12.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("mygene")

Man pages

getGene: Return the gene object for the given geneid.
getGenes: Return the list of gene objects for the given list of...
makeTxDbFromMyGene: makeTxDbFromMyGene
metadata: metadata
MyGene: MyGene
MyGene-class: Class '"MyGene"'
mygene-package: Access MyGene.info annotation services
query: Return the query result.
queryMany: Return the batch query result.

Functions

MyGene Man page
MyGene-class Man page
collapse Source code
df2DF Source code
extract.tables.for.gene Source code
getGene Man page
getGene,MyGene-method Man page
getGene,missing-method Man page
getGenes Man page
getGenes,MyGene-method Man page
getGenes,missing-method Man page
index.tx.id Source code
json.batch.collapse Source code
json2df Source code
makeTxDbFromMyGene Man page Source code
merge.df Source code
metadata Man page
metadata,MyGene-method Man page
mygene Man page
pop Source code
query Man page
query,MyGene-method Man page
query,missing-method Man page
queryMany Man page
queryMany,MyGene-method Man page
queryMany,missing-method Man page
repeated.query Source code
return.as Source code
splitBySize Source code
transpose.nested.list Source code
uncollapse Source code
unnest Source code
unnest.df Source code
validMyGeneObject Source code

Files

DESCRIPTION
NAMESPACE
R
R/mygene.R
R/utils.R
build
build/vignette.rds
inst
inst/doc
inst/doc/mygene.R
inst/doc/mygene.Rnw
inst/doc/mygene.pdf
man
man/MyGene-class.Rd
man/MyGene.Rd
man/getGene.Rd
man/getGenes.Rd
man/makeTxDbFromMyGene.Rd
man/metadata.Rd
man/mygene-package.Rd
man/query.Rd
man/queryMany.Rd
vignettes
vignettes/mygene.Rnw
mygene documentation built on May 20, 2017, 10:56 p.m.