query: Return the query result.

In mygene: Access MyGene.Info_ services

Description

This is a wrapper for GET query of "/query?q=<query>" service.

Usage

query(q, ..., return.as=c("DataFrame", "records", "text"), mygene)

Arguments

q	query term(s), see query syntax at http://mygene.info/doc/query_service.html#query-syntax
...	Commonly queried fields include species, fields, size as well as several other fields. View available fields by calling ?metadata. Also, see http://docs.mygene.info/en/latest/doc/query_service.html for complete argument details and syntax.
return.as	"DataFrame" (default), "records" (list), or "text" (JSON).
mygene	A MyGene object that describes how to connect to data resources. See MyGene-class. If missing, default object will be used that accesses the main MyGene.info portal. Default is recommended.

Value

returns a gene object (DataFrame, list, or JSON text) containing the queried annotations

References

Ref: http://docs.mygene.info/en/latest/doc/query_service.html

See Also

queryMany getGene getGenes

Examples

## return the query result
query("cdk2", size=5)

query("reporter:1000_at")

query("symbol:cdk2", return.as="text")

query(q="cyclin-dependent kinase", fields="uniprot")

mygene documentation built on Nov. 8, 2020, 5:38 p.m.