queryMany: Return the batch query result.

In mygene: Access MyGene.Info_ services

Description

This is a wrapper for POST query of "/query" service.

Usage

queryMany(qterms, scopes=NULL, ..., return.as=c("DataFrame", "records", "text"), mygene)

Arguments

qterms	A vector or list, or string of comma-separated query terms
scopes	Type of types of identifiers, either a list or a comma-separated fields to specify type of input qterms, e.g. c("reporter", "ensembl.gene", "symbol") refer to "http://mygene.info/doc/query_service.html#available_fields" for full list of fields.
...	Commonly queried fields include species, fields, size as well as several other fields. returnall returns a list of all related data including duplicated and missing qterms. False by default. View available fields by calling ?metadata. Also, see http://docs.mygene.info/en/latest/doc/query_service.html for complete argument details and syntax.
return.as	"DataFrame" (default), "records" (list), "text" (JSON).
mygene	A MyGene object that describes how to connect to data resources. See MyGene-class. If missing, default object will be used that accesses the main MyGene.info portal. Default is recommended.

Value

returns a gene object (DataFrame, list, or JSON text) containing the queried annotations

References

Ref: http://docs.mygene.info/en/latest/doc/query_service.html

See Also

query getGene getGenes

Examples

## return the batch query result
queryMany(c('1053_at', '117_at', '121_at'), scopes="reporter", fields="ensembl.gene", 
          species="human", return.as="records")

queryMany(c('1053_at', '117_at', '121_at'), scopes="reporter", species=9606)

queryMany(c('DDX26B', 'CCDC83', 'MAST3', 'FLOT1'), scopes="symbol", fields="entrezgene", species="human")

mygene documentation built on Nov. 8, 2020, 5:38 p.m.