writeNetsSIF: write patient networks in Cytoscape's .sif format
In netDx: Network-based patient classifier

Description Usage Arguments Details Value Examples

write patient networks in Cytoscape's .sif format

writeNetsSIF(
  netPath,
  outFile = paste(tempdir(), "out.sif", sep = getFileSep()),
  netSfx = "_cont.txt"
)

`netPath`	(char): vector of path to network files; file suffix should be '_cont.txt' networks should be in format: A B 1 where A and B are nodes, and 1 indicates an edge between them
`outFile`	(char) path to .sif file
`netSfx`	(char) suffix for network file name

Converts a set of binary interaction networks into Cytoscape's sif format. (http://wiki.cytoscape.org/Cytoscape_User_Manual/Network_Formats) This utility permits visualization of feature selected networks.

No value. Side effect of writing all networks to outFile

netDir <- system.file("extdata","example_nets",package="netDx")
netFiles <- paste(netDir,dir(netDir,pattern='txt$'),
sep=getFileSep())
writeNetsSIF(netFiles,'merged.sif',netSfx='.txt')