Man pages for netboost
Network Analysis Supported by Boosting
| calculate_adjacency | Calculate network adjacencies for filter |
| cpp_dist_tom | Function to calcutate distance |
| cpp_filter_base | Initialise boosting with chosen accelerator hardware (x86,... |
| cpp_filter_end | Boosting cleanup (required to free memory) |
| cpp_filter_step | Single boosting step |
| cpp_tree_search | Tree search. |
| cut_dendro | Module detection for an individual tree |
| cut_trees | Module detection for the results from a nb_mcupgma call |
| dot-onAttach | Package startup: used to fetch installation path of the own... |
| mcupgma_exec | Execute a program/script from the installed MCUPGMA suite. |
| nb_clust | Netboost clustering step |
| nb_dist | Calculate distance (external wrapper for internal C++... |
| nb_filter | Boosting via C++ function. Parallelisation by R-package... |
| nb_mcupgma | Calculate dendrogram for a sparse distance matrix (external... |
| nb_moduleEigengenes | Netboost module aggregate extraction. |
| nb_plot_dendro | Plot dendrogram from Netboost output. |
| nb_summary | Summarize results from a forest. Plot trees together. |
| nb_tranfer | Transfer of Netboost clustering to new data. |
| netboost | Netboost clustering. |
| netboostMCUPGMAPath | Returns the absolute path to folder with mcupgma executables... |
| netboostPackagePath | Returns the absolute path to "exec" folder in the package. |
| netboostTmpCleanup | Cleans the netboost temporary folder. This can be useful... |
| netboostTmpPath | Returns the absolute path to temporary folder of the package.... |
| tcga_aml_meth_rna_chr18 | TCGA RNA and methylation measurement on a subset of... |
| tree_dendro | Calculate the dendrogram for an individual tree |
| tree_search | Extracts independent trees from nb_mcupgma results (external... |
